Return to main results Retrieve Phyre Job Id

Job DescriptionP02919
Confidence98.14%DateThu Jan 5 10:57:35 GMT 2012
Rank80Aligned Residues244
% Identity18%Templatec3a3eB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 (dacb)2 from haemophilus influenzae, complexed with novel beta-3 lactam (cmv)
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   457..460.........470.........480.........490.........500.........510.........520... ......530.....
Predicted Secondary structure 






























.









Query SS confidence 


































































.











Query Sequence  GIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQ. PKIYRLNTWIAD
Query Conservation   
  
        



 




 









 
      


  
 








 






 .
   
  
 
 
Alig confidence 







.
























............




















.











Template Conservation          .       

 
 
  

  
   
 ............     


  

 

 


  

 
 

 
 
  
Template Sequence  NVSDLTQK. LPEGSNAGVIAKNINQNQIIADYNG. . . . . . . . . . . . STFMLPASTQKVFTAVAAKLALGDQFQFETALLS
Template Known Secondary structure 
TT.S
TT
TTTTST............T

B

GGGGT
TT
Template Predicted Secondary structure 
.











............










Template SS confidence 















































































   2930...... ...40.........50.........60. ........70.........80.........90.....
 
   536 ...540.........
Predicted Secondary structure 
..........





........................................................
Query SS confidence 
. . . . . . . . . .












. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  A. . . . . . . . . . PIALRQPNGQVWS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation   ..........
       
  
 ........................................................
Alig confidence 
..........












........................................................
Template Conservation   
    
 
 


 
 
 


 
    
  

  

  

  
 
 

 
 
 
       
                  
Template Sequence  NGKIQNGNLDGNLIVSFTGDPDLTRGQLYSLLAELKKQGIKKINGDLVLDTSVFPPAAANIDNNCFYAELDANKNPGEIV
Template Known Secondary structure 
S
B
SS
S




SS

TT
S
S


B



SS

STT

S
SSSB
Template Predicted Secondary structure 









































Template SS confidence 















































































   96...100.........110.........120.........130.........140.........150.........160.........170.....
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation               
                          
 
                 
       
   
   

 
Template Sequence  KINVPAQFPIQVFGQVYVADSNEAPYCQLDVVVHDNNRYQVKGCLARQYKPFGLSFAVQNTDAYAAAIIQRQLRKLGIEF
Template Known Secondary structure 

TT



SSSSSS

GGG

SS

S
TT
Template Predicted Secondary structure 































Template SS confidence 















































































   196...200.........210.........220.........230.........240.........250.........260.........270.....
 
   550.........560....... ..570.........580........ .590.........600...
Predicted Secondary structure  .........










....



.............







Query SS confidence  . . . . . . . . .

















. . . .




















. . . . . . . . . . . . .














Query Sequence  . . . . . . . . . PQNDDRRYSESGRVMLVD. . . . ALTRSMNVPTVNLGMALGLPA. . . . . . . . . . . . . VTETWIKLGVPKDQL
Query Conservation  .........
 


      
 


  ....


 
 

  
 
   

 
 .............
      


     
Alig confidence  .........








.







....




















.............














Template Conservation           
     

 .  
 

 


  

  


  

 

  

        
   
       
   

     
Template Sequence  NGKVLLPQKPQQGQLLAK. HLSKPLPDLLKKMMKKSDNQIADSLFRAVAFNYYKRPASFQLGTLAVKSILQKQGIRFGNS
Template Known Secondary structure 




SS



.T
SS
B
TTT


TT
Template Predicted Secondary structure 











.



















Template SS confidence 















































































   276...280.........290... ......300.........310.........320.........330.........340.........350....
 
   604.....610..... ....620.........630.........640.........650.........660.........670.........680..
Predicted Secondary structure 








.
























Query SS confidence 











.


































































Query Sequence  HPVPAMLLGALN. LTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGT
Query Conservation     





   .






 








    
  
  
 
  
 

         


   
  
   
  

  

Alig confidence 











.




















.................................












Template Conservation   
 





  
  

  
  

           .................................    

  
  

Template Sequence  ILADGSGLSRHNLVAPKTMLSVLEYIAKNEDKLH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LMETFPIAGVDGT
Template Known Secondary structure  B


SSS

TT
BB
T
.................................
GGGS
BTTTSGG
Template Predicted Secondary structure 














.................................


Template SS confidence 















































































   355....360.........370.........380........ .390.........400.
 
   683.. ....690.........700.........710... ......720.........730.........740.........750.
Predicted Secondary structure  ...












....

















Query SS confidence 


. . .



























. . . .





































Query Sequence  GRQ. . . LGAKYPNLHLAGKTGTTNNNVDTWFAGI. . . . DGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQT
Query Conservation 
  ...         







 
 







....

  
  



 

      

   




   
  
 
Alig confidence 


...





















..



....

















..

















Template Conservation 
  
      
    
  




  
  ..


 
    
    



 
      ..         
      
 
Template Sequence  ISGRGGLISPPLVKNVIAKTGSLKGVYN. . LAGFMTNARGEKVAFVQFINGYSTGD. . LESKTKRAPLVQFERNLY
Template Known Secondary structure  GSS
GGGSSTTTTTT
TT..
TTS
S


S
..TT




Template Predicted Secondary structure 
















..










..
Template SS confidence 











































































   402.......410.........420......... 430.........440.........450..... ....460.........470...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions