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Job DescriptionP02919
Confidence100.00%DateThu Jan 5 10:57:35 GMT 2012
Rank3Aligned Residues566
% Identity26%Templatec2olvA_
PDB info PDB header:transferaseChain: A: PDB Molecule:penicillin-binding protein 2; PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   185....190.........200.........210.........220.........230.........240.........250.........260....
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Query Sequence  NMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQG
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Template Sequence  KLQDPIPAKIYDKNGELVKTLDN. . GQRHEHVNLKDVPKSXKDAVLATEDNRFYEHGALDYKRLFGAI. . . . . . . . . GKG
Template Known Secondary structure 




B


TTS

ST..T
SB



STTS

TT
SS
SSS
S.........T

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   68.70.........80.........90 .........100.........110.........120.........130... ...
 
   265....270.........280.........290.........300.........310.........320.........330.........340....
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Query Sequence  ASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSL
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Template Sequence  ASTLTQQVVKDAFLSQHKSIGRKAQEAYLSYRLEQEYSKDDIFQVYLNKIYYS. . . . DGVTGIKAAAKYYFNKDLKDLNL
Template Known Secondary structure 


TTT

S

TTTS

B
S....TT
BS


STT

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   146...150.........160.........170.........180.........190........ .200.........210.........220.
 
   345....350.........360.........370.........380.........390.........400... ......410...
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Query Sequence  DQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQP. . . . . . . . . . . RGGVISPQPA
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Template Sequence  AEEAYLAGLPQVPNNYNIYDHPKAAEDRKNTVLYLXHYHKRITDKQWEDAKKIDLKANLVNRTPEERQNIDTNQDSEYNS
Template Known Secondary structure  GGGS
TTT
TTSS
TTS
TTTT




S




TTGGG
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   222.......230.........240.........250.........260.........270.........280.........290.........300.
 
   414.....420...... ...430.........440.........450.........460.........470.........480........
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Query Sequence  FMQLVRQELQAKL. . . . . GDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMV
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Template Sequence  YVNFVKSELXNNKAFKDENLGNVLQSGIKIYTNXDKDVQKTLQNDVDNGSFY. . . . . KNKDQQVGATILDSKTGGLVAIS
Template Known Secondary structure  SSTTTTSS
TTBT
S





.....SSTTTTT
B
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   302.......310.........320.........330.........340.........350... ......360.........370......
 
   489490.........500.........510...... ...520.........530.........540.........550.........560.......
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Query Sequence  GGSEPQFAGYNRAMQARRSIGSLAKPAT. YLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVD
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Template Sequence  GGRDFKDVVNRNQATDPHPTGSSLKPFLAYGPAIENXK. WATNHAIQDESSYQVDG. . . . STFRNYDTKS. . HGTVSIYD
Template Known Secondary structure  SSTT

TTTS

TTSS

GGGGT
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TTB

S
SSS....


SS
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   377..380.........390.........400.........410.... .....420.........430. ........440. ........
 
   568.570.........580.... .....590.........600.........610.. .......620.........630.........640.
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Query Sequence  ALTRSMNVPTVNLGMAL. . . . GLPAVTETWIKLGVPKDQLHPVPAMLLG. . ALNLTPIEVAQAFQTIASGGNRAPLSALR
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Template Sequence  ALRQSFNIPALKAWQSVKQNAGNDAPKKFAAKLGLNYE. GDIGPSEVLGGSASEFSPTQLASAFAAIANGGTYNNAHSIQ
Template Known Secondary structure  TT
T
TTTTT


S.S


TT
TT

TTS

B
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   450.........460.........470.........480....... ..490.........500.........510.........520........
 
   642.......650.........660.........670.........680 .........690.........700. .....
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Query Sequence  SVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQR. GTGRQLGAKYPNLHLAGKTGT. . . . . . . . . . . . . . TNNNV
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Template Sequence  KVVTRDGETIE. YDHTSHKAXSDYTAYXLAEXLKGTFKPYGSAY. . GHGVSGVNXGAKTGTGTYGAETYSQYNLPDNAAK
Template Known Secondary structure 
TTS
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S
GGGSSTTSTTT..T


SS





TT

TTS
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   529530......... 540.........550.........560.........570. ........580.........590.........600.....
 
   707..710.........720.........730. ........740.........750 .........760.... .....770........
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Query Sequence  DTWFAGIDGSTVTITWVGRDNNQPT. . . . . . KLYGASGAMSIYQRYLANQ. TPTPLNLVPPEDIA. DMGVDYDGNFVCSG
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Template Sequence  DVWINGFTPQYTXSVWXGFSKVKQYGENSFVGHSQQEYPQFLYENVXSKISSRDGEDFKRPSSVSGSIPSINVSGSQDNN
Template Known Secondary structure 
SSSS

GGGTTSST


S






SSTTTT


TT
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   606...610.........620.........630.........640.........650.........660.........670.........680.....
 
   779780.
Predicted Secondary structure 


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Query Sequence  GMR
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Template Conservation     
Template Sequence  TTN
Template Known Secondary structure  B

Template Predicted Secondary structure 


Template SS confidence 


   686..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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