Job Description P02919 Confidence 100.00% Date Thu Jan 5 10:57:35 GMT 2012 Rank 5 Aligned Residues 418 % Identity 19% Template c2jciA_ PDB info PDB header:drug-binding protein Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: structural insights into the catalytic mechanism and the2 role of streptococcus pneumoniae pbp1b Resolution 2.5 Å

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		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	E	L	S	L	D	Q	Q	A	L	L	V	G	M	V	K	G	A	S	I	Y	N	P	W	R	N	P	K	L	A	L	E	R	R	N	L	V	L	R	L	L	Q	Q	Q	Q	I	I	D	Q	E	L	Y	D	M	L	S	A	R	P	L	G	V	Q	P	R	G	G	V	I	S	P	Q	P	A	F	M	Q	L	V
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	E	I	T	Y	S	D	G	T	V	I	A	S	I	.	.	.	.	.	.	.	.	D	Y	L	Y	F	T	T	L	A	E	A	Q	E	R	M	Y	D	Y	L	A	Q	R	D	N	V	S	A	K	E	L	K	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Template Known Secondary structure								T	T	S							.	.	.	.	.	.	.	.																							T	T			T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.									120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.																								.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	E	L	Q	A	K	L	G	D	K	V	K	D	L	S	G	V	K	I	F	T	T	F	D	S	V	A	Q	D	A	A	E	K	A	A	V	E	G	I	P	A	L	K	K	Q	R	K	L	S	D	L	E	T	A	I	V	V	V	D	R	F	S	G	E	V	R	A	M	V	G	G	S	E	P	Q	F	A	G	Y
Query Conservation
Alig confidence																																																	.	.
Template Conservation																																																	.	.
Template Sequence		T	Q	K	F	Y	R	D	L	A	A	K	E	I	E	N	G	G	Y	K	I	T	T	T	I	D	Q	K	I	H	S	A	M	Q	S	A	V	A	D	Y	G	Y	L	L	D	D	G	T	.	.	G	R	V	E	V	G	N	V	L	M	D	N	Q	T	G	A	I	L	G	F	V	G	G	R	N	Y	Q	E	N	Q	N
Template Known Secondary structure																	S							S																	G	G	G	G			S	S	.	.	S											T	T	T		B								S		T	T	T
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.			.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.		.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		N	R	A	M	Q	A	R	R	S	I	G	S	L	A	K	P	A	.	T	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P	Q	N	D	D	R	R	Y	S	E	S	G	R	V	M	L	V	D	A	L	T	R	S	M	N	V	P	T
Query Conservation																			.
Alig confidence																			.											.																		.	.	.	.											.	.
Template Conservation																														.																		.	.	.	.											.	.
Template Sequence		N	H	A	F	D	T	K	R	S	P	A	S	T	T	K	P	L	L	A	Y	G	I	A	I	D	Q	G	L	.	M	G	S	E	T	I	L	S	N	Y	P	T	N	F	A	N	G	.	.	.	.	N	P	I	M	Y	A	N	S	K	G	.	.	T	G	M	M	T	L	G	E	A	L	N	Y	S	W	N	I	P	A
Template Known Secondary structure			T	T	T	T			B			G	G	G	G					T							T	T	S	.			T	T						S			B		T	T	S	.	.	.	.		B			B	T	T	B			.	.		S											T		S
Template Predicted Secondary structure																														.																		.	.	.	.											.	.
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.					.	.	.	.	.	.	500	.	.	.			.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
		578	.	580	.	.	.	.	.	.	.			.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.		.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
Predicted Secondary structure												.	.																									.
Query SS confidence												.	.																									.
Query Sequence		V	N	L	G	M	A	L	G	L	P	.	.	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	A	M	L	L	.	G	A	L	N	L	T	P	I	E	V	A	Q	A	F	Q	T	I	A	S	G	G	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S
Query Conservation												.	.																									.
Alig confidence												.	.													.												.
Template Conservation																										.
Template Sequence		Y	W	T	Y	R	M	L	R	E	N	G	V	D	V	K	G	Y	M	E	K	M	G	Y	E	.	I	P	E	Y	G	I	E	S	L	P	M	G	G	G	I	E	V	T	V	A	Q	H	T	N	G	Y	Q	T	L	A	N	N	G	V	Y	H	Q	K	H	V	I	S	K	I	E	A	A	D	G	R	V	V	Y	E	Y
Template Known Secondary structure											T	T										T	T			.		S					T	T	G	G	G	T	T	T			B														T	T	T						B	S							T	T	S
Template Predicted Secondary structure																										.
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.		.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.								.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.
Query Sequence		F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	M	Q	Q	V	V	Q	R	G	T	G	R	Q	L	G	A	K	Y	P	.	.	.	.	.	.	.	N	L	H	L	A	G	K	T	G	T	T	N	N	N	V	D	T	W	F	A	G	I	D	G	S	T	V	T	I	T	W	V	G	R	D	N
Query Conservation																																							.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	D	K	P	V	Q	V	Y	S	K	A	T	A	T	I	M	Q	G	L	L	R	E	V	L	S	S	R	V	T	T	T	F	K	S	N	L	T	S	L	N	P	T	L	A	N	A	D	W	I	G	K	T	G	T	T	N	Q	D	E	N	M	W	L	M	L	S	T	P	R	L	T	L	G	G	W	I	G	H	D	D
Template Known Secondary structure									S																		T	T	S	S																T	S										G	G	G										S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		601	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680
		728	.	730	.	.		.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.							.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.														.	.	.	.	.
Predicted Secondary structure							.																						.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																						.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Q	P	T	K	.	L	Y	G	A	S	G	A	M	S	I	Y	Q	R	Y	L	A	N	Q	T	P	T	.	.	.	.	.	.	P	L	N	L	V	P	P	E	D	I	A	D	M	G	V	D	Y	D	G	N	F	V	C	S	G	G	M	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	V	W	T
Query Conservation							.																						.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																						.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	H	S	L	S	Q	Q	A	G	Y	S	N	N	S	N	Y	M	A	H	L	V	N	A	I	Q	Q	A	S	P	S	I	W	G	N	E	R	F	A	L	D	P	S	V	V	K	S	E	V	L	K	S	T	G	Q	K	P	G	K	V	S	V	E	G	K	E	V	E	V	T	G	S	T	V	T	S	Y	W	A	N	K
Template Known Secondary structure							T	T	T	T	T	T																	S	T	T	S	S									T	T								T	T	T	S	S	B							S	S	S						S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		681	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760
		788	.	790	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	P	Q	S	L	C	Q	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	A	P	A	T	S	Y	R	F
Template Known Secondary structure		S				B			T	T
Template Predicted Secondary structure
Template SS confidence
		761	.	.	.	.	.	.	.	.	770