Job Description P02919 Confidence 40.81% Date Thu Jan 5 10:57:35 GMT 2012 Rank 112 Aligned Residues 88 % Identity 20% Template c2a6eF_ PDB info PDB header:transferase Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: crystal structure of the t. thermophilus rna polymerase2 holoenzyme Resolution 2.80 Å

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		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	R	S	Y	W	R	K	A	N	E	A	Y	M	A	L	I	M	D	A	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	E	L	A	R	K	V	E	E	G	M	E	A	I	K	K	L	S	E	I	T	G	L	D	P	D	L	I	R	E	V	V	R	A	K	I	L	G	S	A	R	V	R	H	I	P	G	L	K	E	T	L	D	P	K	T	V	E	E	I	D	Q	K	L	K	S	L	P	K	E	H	K	R	Y	L	H	I	A	R
Template Known Secondary structure																																															T	T	S		S	S	S		T	T													S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
						302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	S	K	D	R	I	L	E	L	Y	M	N	E	V	Y	L	G	Q	S	G	D	N	E	I	R	G	F	P	L	A	S	L	Y	Y	F	G	R	P	V	E	E	L	S	L	D	Q	Q	A	L	L	V	G	M	V	K	G	A	S	I	Y	N	P	W	R	N	P	K	L	A	L	E	R	R	N	L	V	L
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		E	G	E	A	A	R	Q	H	L	I	E	A	N	L	R	L	V	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	K	K	Y	T	G	R	G	L	S	F	L	D	L	I	Q	E	G	N	Q	.	G	L	I	R	A	V	E	K	F	E	Y	K	R	R	F	K	F	S	T	Y	A	T	W	W	I	R
Template Known Secondary structure														T							.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S		T	T	T	S												.											T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.														.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		378	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	L	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	I	N	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions