Job Description P02919 Confidence 100.00% Date Thu Jan 5 10:57:35 GMT 2012 Rank 13 Aligned Residues 333 % Identity 15% Template c1qmfA_ PDB info PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:penicillin-binding protein 2x; PDBTitle: penicillin-binding protein 2x (pbp-2x) acyl-enzyme complex Resolution 2.80 Å

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		423	.	.	.	.	.	.	430	.	.	.									.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.
Query Sequence		Q	A	K	L	G	D	K	V	K	D	L	.	.	.	.	.	.	.	.	S	G	V	K	I	F	T	T	F	D	S	V	A	Q	D	A	A	E	K	A	A	V	E	G	I	P	A	L	K	K	Q	R	K	L	S	D	L	E	T	A	I	V	V	V	D	R	F	S	G	E	V	R	A	M	V	G	G	S	E	P	Q
Query Conservation													.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		M	E	S	S	L	N	S	I	L	A	G	T	D	G	I	I	R	T	M	D	G	K	D	V	Y	T	T	I	S	S	P	L	Q	S	F	M	E	T	Q	M	D	A	F	Q	E	K	V	K	G	K	Y	.	.	.	.	.	.	M	T	A	T	L	V	S	A	K	T	G	E	I	L	A	T	T	Q	R	P	T	F	D
Template Known Secondary structure						T							B		B					B								S																							S		.	.	.	.	.	.								T	T	T		B								S
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.							270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		495	.	.	.											.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.
Query Sequence		F	A	G	Y	.	.	.	.	.	.	.	.	.	.	N	R	A	M	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P	Q	N	D	D	R	R	Y	S	E	S	G	R	V	M
Query Conservation						.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.																												.																								.								.	.
Template Conservation																																											.																								.								.	.
Template Sequence		A	D	T	K	E	G	I	T	E	D	F	V	W	R	D	I	L	Y	Q	S	N	Y	E	P	G	S	T	M	K	V	M	M	L	A	A	A	I	D	N	N	T	.	F	P	G	G	E	V	F	N	S	S	E	L	K	I	A	D	A	T	I	R	D	W	D	.	V	N	E	G	L	T	G	.	.	G	R	M	M	T
Template Known Secondary structure		T	T	T		T	T			T	T						T	T	T	S			B			G	G	G	G											T	T		.			T	T						S				S	S	S								.			S		T	T		.	.	S
Template Predicted Secondary structure																																											.																								.								.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.			.	.	.	.	.
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.																			.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	D	A	L	T	R	S	M	N	V	P	T	V	N	L	G	M	A	L	G	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	L	L	G	A	L	N	L	T	P	I	E	V	A	Q	A	F	Q
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation																																																																				.
Template Sequence		F	S	Q	G	F	A	H	S	S	N	V	G	M	T	L	L	E	Q	K	M	G	D	A	T	W	L	D	Y	L	N	R	F	K	F	G	V	P	T	R	F	G	L	T	D	E	Y	A	G	Q	L	P	A	D	N	I	V	N	I	A	Q	S	S	F	G	Q	G	.	I	S	V	T	Q	T	Q	M	I	R	A	F	T
Template Known Secondary structure								T	T																								T	T	T	T	S					S	S	S	S					B				S	S	T	T					G	G	G	T		S	.		B	B
Template Predicted Secondary structure																																																																				.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.		.	.	.	.	.	.	460	.	.	.	.	.	.
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.		.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680										.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
Predicted Secondary structure																																		.																							.	.	.	.	.	.	.	.	.
Query SS confidence																																		.																							.	.	.	.	.	.	.	.	.
Query Sequence		T	I	A	S	G	G	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	.	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	M	Q	Q	V	V	Q	R	.	.	.	.	.	.	.	.	.	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A
Query Conservation																																		.																							.	.	.	.	.	.	.	.	.
Alig confidence																																		.																							.	.	.	.	.	.	.	.	.							.
Template Conservation																																																																								.
Template Sequence		A	I	A	N	D	G	V	M	L	E	P	K	F	I	S	A	I	Y	D	P	N	D	Q	T	A	R	K	S	Q	K	E	I	V	G	N	P	V	S	K	D	A	A	S	L	T	R	T	N	M	V	L	V	G	T	D	P	V	Y	G	T	M	Y	N	H	S	T	G	K	P	T	.	V	T	V	P	G	Q	N	V	A
Template Known Secondary structure					T	T	T						B								T	T	T	T														S																			S	S	S		T	T	B		T	T	T	S	S	B	S	.	S		B	T	T	B
Template Predicted Secondary structure																																																																								.
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.		.	.	.	540	.	.	.	.	.
		697	.	.	700	.	.														.	.	.	.	.	.	.	710	.	.	.	.	.					.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query Sequence		G	K	T	G	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	N	V	D	T	W	F	A	G	I	D	G	.	.	.	.	S	T	V	T	I	T	W	V	G	R	D	N	N	Q	P	T	K	L	Y	G	A	S	G	A	M	S	I	Y	Q	R	Y	L	A	N	Q	T	P	T	P	L	N	L	V	P
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.														.	.	.	.	.
Template Conservation																																																			.	.	.	.	.
Template Sequence		L	K	S	G	T	A	Q	I	A	D	E	K	N	G	G	Y	L	V	G	L	T	D	Y	I	F	S	A	V	S	M	S	P	A	E	N	P	D	F	I	L	Y	V	T	V	Q	Q	P	E	H	.	.	.	.	.	Y	S	G	I	Q	L	G	E	F	A	N	P	I	L	E	R	A	S	A	M	K	D	S	L	N	L
Template Known Secondary structure												S	S	S	S	S	S				S	S											S	S	S	S		S									S		S	S	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.
Template SS confidence
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.						.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620
		760	.	.	.	.	.	.	.	.	.	770	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	D	I	A	D	M	G	V	D	Y	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	P	Y	P	M	P	S	V	K	D	I	S
Template Known Secondary structure						B					S	S
Template Predicted Secondary structure
Template SS confidence
		633	.	.	.	.	.	.	640	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions