Job Description P02919 Confidence 20.03% Date Thu Jan 5 10:57:35 GMT 2012 Rank 114 Aligned Residues 76 % Identity 29% Template c1l9uH_ PDB info PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution Resolution 4.00 Å

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		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																																																	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	L	S	S	E	R	S	Y	W	R	K	A	N	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	M	A	L	I	M	D	A	R	Y	S	K	D	R	I	L
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	L	E	E	E	I	D	L	A	R	K	V	E	E	G	M	E	A	I	K	K	L	S	E	A	T	G	L	D	Q	E	L	I	R	E	V	V	R	A	K	I	L	G	T	A	R	V	E	E	V	D	G	K	L	K	S	L	P	K	E	L	K	R	Y	L	H	I	A	R	E	G	E	A	A	R	Q	H	L	I
Template Known Secondary structure				T	T	T	T	T	T	T	T																	T	T		T	T												T	T	T	S	S			T	T						S			T	T		S										T	T	G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	Y	M	N	E	V	Y	L	G	Q	S	G	D	N	E	I	R	G	F	P	L	A	S	L	Y	Y	F	G	R	P	V	E	E	L	S	L	D	Q	Q	A	L	L	V	G	M	V	K	G	A	S	I	Y	N	P	W	R	N
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		E	A	N	L	R	L	V	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	K	K	Y	T	G	R	G	L	S	F	L	D	L	I	Q	E	G	N	Q	.	G	L	I	R	A	V	E	K	F	E	Y	K	R	R
Template Known Secondary structure		S	S							T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S	T	T	S	S	S	S												.						T	T	S			S	S	S	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		204	.	.	.	.	.	210	.	.														.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions