Return to main results Retrieve Phyre Job Id

Job DescriptionP75952
Confidence99.84%DateThu Jan 5 12:16:21 GMT 2012
Rank58Aligned Residues186
% Identity15%Templatec3ccyA_
PDB info PDB header:transcription regulatorChain: A: PDB Molecule:putative tetr-family transcriptional regulator; PDBTitle: crystal structure of a tetr-family transcriptional regulator from2 bordetella parapertussis 12822
Resolution2.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60.........70.........80.........90.......
Predicted Secondary structure 



















Query SS confidence 















































































Query Sequence  VFDRDAALDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESAL
Query Conservation     
  

 

  
    
    

  

  



    
  
 

  

                              
Alig confidence 




































































.









Template Conservation 
  
  

 

  
    
    

  

  



  
 
  
 


 

                   .         
Template Sequence  ENIRDTIIERAAAXFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDXLTTHVDSLLERCRQVL. YGSNEPKTRF
Template Known Secondary structure  TTT
TTTS
TT

GGGGTTT
S
.TT
S
Template Predicted Secondary structure 











.



Template SS confidence 















































































   10.........20.........30.........40.........50.........60.........70........ .80........
 
   98.100.........110.........120.........130.........140.........150.........160.........170.......
Predicted Secondary structure 












Query SS confidence 















































































Query Sequence  ADYFAAIANCFTSKDTPAGCFMINNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPPHCDVTHLAEFLNCI
Query Conservation                                                        
      
           
      
Alig confidence 


























....



































.











Template Conservation                             ....                                    .            
Template Sequence  LQIVKLFLEIYATSRDRHVVXLTCLDA. . . . LPEDQRKALIAKQRELIAYVRDALLQLRPDXAANRT. LAHVDTXLFFGX
Template Known Secondary structure  GGG....S
S
GGGTT
.
Template Predicted Secondary structure 
....








.
Template SS confidence 















































































   8990.........100.........110..... ....120.........130.........140.........150. ........160...
 
   178.180.........190.........200.........210
Predicted Secondary structure 






Query SS confidence 
































Query Sequence  IQGMSISAREGASLEKLMQIAGTTLRLWPELVK
Query Conservation    
           
 
   
   
  
  


Alig confidence 














.
















Template Conservation                 .              


Template Sequence  INWTYTWYKADGSVS. PDALAERTVQLFLDGYL
Template Known Secondary structure  GGGGT

TTSSS
.
GG
Template Predicted Secondary structure 





.
Template SS confidence 
































   164.....170........ .180.........190.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions