 |
Job Description | P75952 | Confidence | 36.53% | Date | Thu Jan 5 12:16:21 GMT 2012 |
Rank | 467 | Aligned Residues | 62 |
% Identity | 18% | Template | c2dmtA_ |
PDB info |
PDB header:dna binding protein | Chain: A: PDB Molecule:homeobox protein barh-like 1; |
PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1
|
Resolution | UNK |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | |
. | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | T | D | S | T | Q | C | V | K | K | S | R | G | R | P | K | V | F | D | R | D | A | A | L | D | K | A | M | K | L | F | W | Q | H | G | Y | . |
E | A | T | S | L | A | D | L | V | E | A | T | G | A | K | A | P | T | L | Y | A | E | F | T | N | K |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |
|   |   |
|
|   |
|
|   |   |
|   |   |   |   |
|   | . |   |   |   |
|
|   |   |
|
|   |   |
|
|
|
|   |   |   |   |
|   |   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |
|
|   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |
|
|   |   |   |
|   |   |
|
|   |   |
|   |
|   |   |   |
|
|   |   |
|
|
|
|
|
Template Sequence |   |
S | G | G | E | P | G | T | K | A | K | K | G | R | R | S | R | T | V | F | T | E | L | Q | L | M | G | L | E | K | R | F | E | K | Q | K | Y | L | S | T | P | D | R | I | D | L | A | E | S | L | G | L | S | Q | L | Q | V | K | T | W | Y | Q | N | R |
Template Known Secondary structure |   |
|
|
|
| S |
|
|
|
|
|
|
|
|
| S |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|