Job Description P75952 Confidence 99.86% Date Thu Jan 5 12:16:21 GMT 2012 Rank 48 Aligned Residues 181 % Identity 20% Template c1sgmA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf; PDBTitle: crystal structure of hypothetical protein yxaf Resolution 2.00 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		D	R	D	A	A	L	D	K	A	M	K	L	F	W	Q	H	G	Y	E	A	T	S	L	A	D	L	V	E	A	T	G	A	K	A	P	T	L	Y	A	E	F	T	N	.	K	E	G	L	F	R	A	V	L	D	R	Y	I	D	R	F	A	A	K	H	E	A	Q	L	F	C	E	E	K	S	V	E	S	A	L	A
Query Conservation																																													.
Alig confidence																																													.																									.
Template Conservation																																																																						.
Template Sequence		S	R	E	K	I	L	H	T	A	S	R	L	S	Q	L	Q	G	Y	H	A	T	G	L	N	Q	I	V	K	E	S	G	A	P	K	G	S	L	Y	H	F	F	P	N	G	K	E	E	L	A	I	E	A	V	T	Y	T	G	K	I	V	E	H	L	I	Q	Q	S	M	.	D	E	S	S	D	P	V	E	A	I	Q
Template Known Secondary structure																			T	T	T														S						S	T	T	T																										.		T		S	S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	F	A	A	I	A	N	C	F	T	S	K	D	T	P	A	G	C	F	M	I	N	N	C	T	T	L	S	P	D	S	G	D	I	A	N	T	L	K	S	R	H	A	M	Q	E	R	T	L	Q	Q	F	L	C	Q	R	Q	A	R	G	E	I	P	P	H	C	D	V	T	H	L	A	E	F	L	N	C	I	I
Query Conservation
Alig confidence																																																										.	.	.	.							.
Template Conservation																																																										.	.	.	.							.
Template Sequence		L	F	I	K	K	T	A	S	Q	F	D	N	T	E	S	I	K	G	I	P	V	G	L	L	A	S	E	T	A	L	I	S	E	P	L	R	T	V	C	M	K	V	F	K	S	W	E	A	V	F	A	R	K	L	M	E	.	.	.	.	N	G	F	A	E	E	.	E	A	N	Q	L	G	T	L	I	N	S	M	I
Template Known Secondary structure										T	T	S	S	G	G	G					T	T								T	T	S																										.	.	.	.	T	T					.
Template Predicted Secondary structure																																																										.	.	.	.							.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	M	S	I	S	A	R	E	G	A	S	L	E	K	L	M	Q	I	A	G	T	T	L	R	L	W	P	E	L	V	K
Query Conservation
Alig confidence																								.	.	.	.
Template Conservation																								.	.	.	.
Template Sequence		E	G	G	I	M	L	S	L	T	N	K	D	K	T	P	L	L	L	I	A	E	Q	.	.	.	.	I	P	V	L	V	R
Template Known Secondary structure												T		S								T	T	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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