Job Description P0A9M0 Confidence 100.00% Date Thu Jan 5 11:10:41 GMT 2012 Rank 12 Aligned Residues 391 % Identity 19% Template c3pxiB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc Resolution 6.93 Å

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		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		D	N	G	E	H	F	S	A	K	A	E	Y	L	E	S	P	T	I	D	E	R	E	Q	E	V	L	V	R	T	A	I	S	Q	F	E	G	Y	I	K	L	N	K	K	I	P	P	E	V	L	T	S	L	N	S	I	D	D	.	.	.	P	A	R	L	A	D	T	I	A	A	H	M	P	L	K	L	A	D	K	Q
Query Conservation																																																											.	.	.
Alig confidence																																								.	.																		.	.	.
Template Conservation																																								.	.
Template Sequence		E	K	D	A	A	L	E	R	R	F	Q	P	I	Q	V	D	Q	P	S	V	D	E	S	I	Q	I	L	Q	G	L	R	D	R	Y	E	A	H	H	.	.	R	V	S	I	T	D	D	A	I	E	A	A	V	K	L	S	D	R	Y	I	S	D	R	F	L	P	D	K	A	I	D	L	I	D	E	A	G	S	K	V
Template Known Secondary structure		T	T		S	S	S	S	S	S																										G	G	G	S	.	.	S		S																S	S			S		T	T
Template Predicted Secondary structure																																								.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	L	E	M	S	D	V	N	E	R	L	E	Y	L	M	A	M	M	E	S	E	I	D	L	L	Q	V	E	K	R	I	R	N	R	V	K	K	Q	M	E	K	S	Q	R	E	Y	Y	L	N	E	Q	M	K	A	I	Q	K	E	L	G	E	M	D	D	A	P	D	E	N	E	A	L	K	R	K	I	D	A	A
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		R	L	R	S	F	T	P	N	L	K	E	L	E	Q	K	L	D	E	V	R	K	E	K	D	A	A	V	Q	S	Q	E	F	E	K	A	A	S	L	R	D	T	E	Q	R	L	R	E	Q	V	E	D	T	K	K	S	W	K	E	K	Q	G	Q	E	E	V	T	V	D	D	I	A	M	V	V	S	S	W	T	A	.
Template Known Secondary structure										T	T																		T	T			S																			T	T	T	G	G	G						T				T														.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	P	K	E	A	K	E	K	A	E	A	E	L	Q	K	L	K	M	M	S	P	M	S	A	E	A	T	V	V	R	G	Y	I	D	W	M	V	Q	V	P	W	N	A	R	S	K	V	K	K	D	L	R	Q	A	Q	E	I	L	D	T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	E	T	D	K	L	L	N	M	E	N	I	L	H	S	R	V	I	G	Q	D	E	A	V	V	A	V	A	K	A	V	R	R	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T							T	T	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																															493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
		342				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.				.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure			.	.	.																																.	.	.
Query SS confidence			.	.	.																																.	.	.
Query Sequence		S	.	.	.	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	.	.	.	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V
Query Conservation			.	.	.																																.	.	.
Alig confidence			.	.	.																																.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	G	L	K	D	P	K	R	P	I	G	S	F	I	F	L	G	P	T	G	V	G	K	T	E	L	A	R	A	L	A	E	S	I	F	G	D	E	E	S	M	I	R	I	D	M	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	M	E	K	H	S	T	S	L	T	E	K	V	R	R	K	P	Y
Template Known Secondary structure		T	T	T		S		T	T	S		S							S		T	T	S	S														S		T	T							G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G		S	S													S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.														.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.														.	.	.	480	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	A	P	L	L
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.											.	.	.	.														.	.	.							.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.											.	.	.	.														.	.	.							.	.	.	.	.	.
Template Sequence		S	.	.	V	V	L	L	D	A	I	E	K	A	.	.	.	.	H	P	D	V	F	N	I	L	L	Q	V	L	E	.	.	.	D	G	R	L	T	T	.	.	.	.	.	.	V	D	F	R	N	T	I	L	I	M	T	S	N	V	G	A	S	E	K	D	K	V	M	G	E	L	K	R	A	F	R	P	E	F	I
Template Known Secondary structure		S	.	.							G	G	G	S	.	.	.	.														.	.	.		S	B				.	.	.	.	.	.		B		T	T								S	S	S	T	T													S
Template Predicted Secondary structure			.	.											.	.	.	.														.	.	.							.	.	.	.	.	.
Template SS confidence
		612			.	.	.	.	.	.	.	620	.	.					.	.	.	.	.	.	.	630	.	.	.	.	.				.	.	.	.	640	.							.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.
		483	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.		.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure							.																																																.
Query SS confidence							.																																																.
Query Sequence		D	R	M	E	V	.	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	.	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K	L	C	R	K	A	V	K	Q	L	L
Query Conservation							.																																																.
Alig confidence							.							.	.																						.																		.
Template Conservation														.	.																						.
Template Sequence		N	R	I	D	E	I	I	V	F	H	E	K	.	.	K	H	L	T	E	I	V	S	L	M	S	D	Q	L	T	K	R	L	K	E	Q	.	D	L	S	I	E	L	T	D	A	A	K	A	K	V	A	E	E	G	V	D	L	E	Y	G	A	R	P	L	R	R	A	I	Q	K	H	V	E	D	R	L	S	E	E	L
Template Known Secondary structure		T	T	S	S									.	.																				T	T	.	T															G	G	G			T	T	T	T	T	T	T									T
Template Predicted Secondary structure														.	.																						.
Template SS confidence
		703	.	.	.	.	.	.	710	.	.	.	.			.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.		.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.
					561	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	L	D	K	S	L	K	H	I	E	I	N	G	D	N
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		L	R	G	N	I	H	K	G	Q	H	I	V	L	D	V	E	D
Template Known Secondary structure			T	T		S		S	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		782	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.