Job Description P0A9M0 Confidence 100.00% Date Thu Jan 5 11:10:41 GMT 2012 Rank 1 Aligned Residues 494 % Identity 59% Template c3m6aC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:atp-dependent protease la 1; PDBTitle: crystal structure of bacillus subtilis lon c-terminal domain Resolution 3.40 Å

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		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	E	N	E	A	L	K	R	K	I	D	A	A	K	M	P	K	E	A	K	E	K	A	E	A	E	L	Q	K	L	K	M	M	S	P	M	S	A	E	A	T	V	V	R	G	Y	I	D	W	M	V	Q	V	P	W	N	A	R	S	K	V	K	K	D	L	R	Q	A	Q	E	I	L	D	T	D	H	Y	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	E	V	Q	T	L	T	E	K	I	E	E	A	G	M	P	D	H	V	K	E	T	A	L	K	E	L	N	R	Y	E	K	I	P	S	S	S	A	E	S	S	V	I	R	N	Y	I	D	W	L	V	A	L	P	W	T	D	E	T	D	D	K	L	D	L	K	E	A	G	R	L	L	D	E	E	H	H	G	L
Template Known Secondary structure				T	T	T								S	S	S															S	S				S	S	S		T	T	T	T												S		S	S									T	T	T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	M	P	G	K	L	I
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	V	K	E	R	I	L	E	Y	L	A	V	Q	K	L	T	K	S	L	K	G	P	I	L	C	L	A	G	P	P	G	V	G	K	T	S	L	A	K	S	I	A	K	S	L	G	R	K	F	V	R	I	S	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	I	I
Template Known Secondary structure																		S	S	S			S							S	S	S	S	S	S													T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.																					.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		Q	K	M	A	K	V	G	V	K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	I	P	A	P	L	L	D	R	M	E
Query Conservation																																																																							.
Alig confidence																							.	.	.	.	.	.	.	.	.																																								.
Template Conservation																							.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	M	K	K	A	G	K	L	N	P	V	F	L	L	D	E	I	D	K	M	.	.	.	.	.	.	.	.	.	S	A	M	L	E	V	L	D	P	E	Q	N	S	S	F	S	D	H	Y	I	E	E	T	F	D	L	S	K	V	L	F	I	A	T	A	N	N	L	A	T	I	P	G	P	L	R	D	R	M	E
Template Known Secondary structure						T	T		S	S	S								S	S	S		.	.	.	.	.	.	.	.	.				G	G	G	T		T	T	T	T	T	B				S	S	S					B		S	S								S	S	T	T	T	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.										.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K	L	C	R	K	A	V	K	Q	L	L	L	D	K	S	L	K
Query Conservation
Alig confidence																																																																																.
Template Conservation																																																																																.
Template Sequence		I	I	N	I	A	G	Y	T	E	I	E	K	L	E	I	V	K	D	H	L	L	P	K	Q	I	K	E	H	G	L	K	K	S	N	L	Q	L	R	D	Q	A	I	L	D	I	I	R	Y	Y	T	R	E	A	G	V	R	S	L	E	R	Q	L	A	A	I	C	R	K	A	A	K	A	I	V	A	E	E	R	.	K
Template Known Secondary structure																				T									T				G	G	G																			S	S	S																				T	T			.	S
Template Predicted Secondary structure																																																																																.
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.		.
		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	E	I	N	G	D	N	L	H	D	Y	L	G	V	Q	R	F	D	Y	G	R	A	D	N	E	N	R	V	G	Q	V	T	G	L	A	W	T	E	V	G	G	D	L	L	T	I	E	T	A	C	V	P	G	K	G	K	L	T	Y	T	G	S	L	G	E	V	M	Q	E	S	I	Q	A	A	L	T	V	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	T	V	T	E	K	N	L	Q	D	F	I	G	K	R	I	F	R	Y	G	Q	A	E	T	E	D	Q	V	G	V	V	T	G	L	A	Y	T	T	V	G	G	D	T	L	S	I	E	V	S	L	S	P	G	K	G	K	L	I	L	T	G	K	L	G	D	V	M	R	E	S	A	Q	A	A	F	S	Y	V	R
Template Known Secondary structure							T	T	T	T						S			S			S	T	T	S				B	S	S									T	T													S	S		S							S																	T
Template Predicted Secondary structure
Template SS confidence
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
		647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	A	E	K	L	G	I	N	P	D	F	Y	E	K	R	D	I	H	V	H	V	P	E	G	A	T	P	K	D	G	P	S	A	G	I	A	M	C	T	A	L	V	S	C	L	T	G	N	P	V	R	A	D	V	A	M	T	G	E	I	T	L	R	G	Q	V	L	P	I	G	G	L	K	E	K	L	L	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	T	E	E	L	G	I	E	P	D	F	H	E	K	Y	D	I	H	I	H	V	P	E	G	A	V	P	K	D	G	P	A	A	G	I	T	M	A	T	A	L	V	S	A	L	T	G	R	A	V	S	R	E	V	G	M	T	G	E	I	T	L	R	G	R	V	L	P	I	G	G	L	K	E	K	A	L	G	A
Template Known Secondary structure		S	S		G	G	G	S	S		S	S		T	T	T									T	T	S		G	G	G	G	G	G	G													S	S			B		T	T									T	T		B					S
Template Predicted Secondary structure
Template SS confidence
		645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.
		727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	G	G	I	K	T	V	L	I	P	F	E	N	K	R	D	L	E	E	I	P	D	N	V	I	A	D	L	D	I	H	P	V	K	R	I	E	E	V	L	T	L	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	R	A	G	L	T	T	I	I	A	P	K	D	N	E	K	D	I	E	D	I	P	E	S	V	R	E	G	L	T	F	I	L	A	S	H	L	D	E	V	L	E	H	A	L
Template Known Secondary structure				T	T		S	B					G	G	G	G	G	G	T	T	T	S						T	S		B					S	B									B
Template Predicted Secondary structure
Template SS confidence
		725	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.