Job Description P0A9M0 Confidence 95.20% Date Thu Jan 5 11:10:41 GMT 2012 Rank 338 Aligned Residues 128 % Identity 17% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.																.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.						.	.	.	.	.
Predicted Secondary structure																					.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Query SS confidence																					.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Query Sequence		K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	.	Q	S	I	A	K	A	T	G	R	K	Y	V	R	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	.	.	.	.	.	M	P	G	K	L
Query Conservation																					.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Alig confidence																					.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation
Template Sequence		R	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	K	Q	R	V	I	Y	T	S	P	I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	V	G	L	M	T	G	D	I	T	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L
Template Known Secondary structure		T	T									S	S	S																T	T								S	S															T	S	S						S	S		B				S		S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		407	.	.	410	.	.	.	.	.	.	.	.				.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.										.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure														.	.	.																																															.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.																																															.	.	.	.	.	.	.	.	.
Query Sequence		I	Q	K	M	A	K	V	G	V	K	N	P	.	.	.	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	.	.	.	.	.	.	.	.	.	D	V	M	F	V	A	T	S	N	S
Query Conservation														.	.	.																																															.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.																																															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	V	V	W	E	E	T	I	I	L	L	P	D	K	V	R	Y	V	F	L	S	A	T	I	P	N	A	M	E	F	A	E	W	I	C	K	I	H	S	Q	P	C	H	I	V	Y	T	N	F	R
Template Known Secondary structure									S	S												T	G	G	G	T	T	S														S		T	T	S								S		S	S												T		S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		475
Predicted Secondary structure
Query SS confidence
Query Sequence		M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		323

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions