Job Description P0A9M0 Confidence 100.00% Date Thu Jan 5 11:10:41 GMT 2012 Rank 2 Aligned Residues 459 % Identity 26% Template c3k1jA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent protease lon; PDBTitle: crystal structure of lon protease from thermococcus onnurineus na1 Resolution 2.00 Å

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		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	P	W	N	A	R	S	K	V	K	K	D	L	R	Q	A	Q	E	I	L	D	T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	K	Y	V	R
Query Conservation
Alig confidence																								.																	.	.	.	.	.	.	.	.
Template Conservation																								.																	.	.	.	.	.	.	.	.
Template Sequence		S	L	E	L	G	I	E	F	T	T	T	E	E	I	E	V	P	E	K	L	I	D	.	Q	V	I	G	Q	E	H	A	V	E	V	I	K	T	A	A	.	.	.	.	.	.	.	.	N	Q	K	R	H	V	L	L	I	G	E	P	G	T	G	K	S	M	L	G	Q	A	M	A	E	L	L	P	T	E	T	L	E
Template Known Secondary structure						S	S			S	B	G	G	G	S				S	S				.				S													.	.	.	.	.	.	.	.		T	T									T	T	S	S											T	S			S	S
Template Predicted Secondary structure																								.																	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.									.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	I	L	V	F	P	N	P	E	D	E	N	M	P	R	I	K	T	V	P	A	C	Q	G	R	R	I	V	E	K	Y	R	E	K	A	K	S	Q	E	S	V	L	V	P	K	L	L	V	D	N	C	G	R	T	K	A	P	F	I	D	A	T	G	A	H	A	G	A	L	L	G	D	V	R	H	D	P	F	L	G
Template Known Secondary structure									T	T		T	T	S								T	T																	T												T	T		S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
																	416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.										.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	.	.	.	.	.	.	.	.	.	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		T	P	A	H	E	R	V	E	P	G	M	I	H	R	A	H	K	G	V	L	F	I	D	E	I	A	T	L	.	.	.	.	S	L	K	M	Q	Q	S	L	L	T	A	M	Q	E	K	K	F	P	I	T	G	Q	S	E	M	S	S	G	A	M	V	R	T	E	P	V	P	C	D	F	V	L	V	A	A	G	N	L
Template Known Secondary structure				G	G	G	G									T	T	T	S					T	T	G	G	G	S	.	.	.	.															S					B		S		T	T	S	G	G	G	G		B		S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.			.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.					.	.
Predicted Secondary structure																																				.	.																																							.	.	.	.
Query SS confidence																																				.	.																																							.	.	.	.
Query Sequence		S	N	S	M	N	I	P	A	P	L	L	D	R	M	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	.	.	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	.	.	.	.	L	E
Query Conservation																																				.	.																																							.	.	.	.
Alig confidence																																				.	.																																							.	.	.	.
Template Conservation
Template Sequence		D	T	V	D	K	M	H	P	A	L	R	S	R	I	R	G	Y	G	Y	E	V	Y	M	R	T	T	M	P	D	T	I	E	N	R	R	K	L	V	Q	F	V	A	Q	E	V	K	R	D	G	K	I	P	H	F	T	K	E	A	V	E	E	I	V	R	E	A	Q	K	R	A	G	R	K	G	H	L	T	L	R	L
Template Known Secondary structure							S												S							S																									S	S			B	B														T	T		S	T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.																.	590	.	.	.	.	.	.	.	.	.	600	.	.		.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query Sequence		R	E	I	S	K	L	C	R	K	A	V	K	Q	L	L	L	D	K	S	L	K	H	I	E	I	N	G	D	N	L	H	D	Y	L	G	V	Q	R	F	D	Y	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	N	E	N	R	V	G	Q	V	T	G	L	A	.	W	T	E	V	G	G	D
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Alig confidence																						.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																						.	.	.
Template Sequence		R	D	L	G	G	I	V	R	A	A	G	D	I	A	V	K	K	G	K	K	.	.	.	Y	V	E	R	E	D	V	I	E	A	V	K	M	A	K	P	L	E	K	Q	L	A	D	W	Y	I	E	R	K	K	E	Y	Q	V	I	K	T	E	G	S	E	I	G	R	V	N	G	L	A	V	I	G	E	Q	S	G	I
Template Known Secondary structure																		T	T		S	.	.	.	S	B												T																	T	T						S	S			T	T									T	T	T
Template Predicted Secondary structure																						.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.				.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		610	.	.	.	.	.	.	.	.	.	620	.					.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		L	L	T	I	E	T	A	C	V	P	G	K	.	.	.	.	G	K	L	T	Y	T	G	S	L	G	E	V	M	Q	E	S	I	Q	A	A	L	T	V	V	R	A	R	A	E	K	L	G	I	N	P	D	F	Y	E	K	R	D	I	H	V	H	V	P	E	G	A	T	P	K	D	G	P	S	A	G	I	A	M	C
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																													.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.
Template Sequence		V	L	P	I	E	A	V	V	A	P	A	A	S	K	E	E	G	K	I	I	V	T	G	K	L	G	E	I	A	K	E	A	V	Q	N	V	S	A	I	I	K	R	Y	K	.	.	.	.	.	.	G	E	D	I	S	R	Y	D	I	H	V	Q	F	L	Q	T	Y	E	G	V	E	G	D	A	A	S	I	S	V	A
Template Known Secondary structure													S	S	S	S								S		B																				.	.	.	.	.	.		G	G	G	G	G								T	T		T	T		B		S	S	T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.							500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
		686	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	L	V	S	C	L	T	G	N	P	V	R	A	D	V	A	M	T	G	E	I	T	L	R	G	Q	V	L	P	I	G	G	L	K	E	K	L	L	A	A	H	R	G	G	I	K	T	V	L	I	P	F	E	N	K	R	D	L	E	E	I	P	D	N	V	I	A	D	L	D	I	H	P	V	K	R	I	E	E
Query Conservation
Alig confidence																																																														.
Template Conservation																																																														.
Template Sequence		T	A	V	I	S	A	L	E	G	I	P	I	R	Q	D	V	A	M	T	G	S	L	S	V	R	G	E	V	L	P	I	G	G	A	T	P	A	I	E	A	A	I	E	A	G	I	K	M	V	I	I	P	K	S	N	E	K	D	V	F	.	L	S	K	D	K	A	E	K	I	Q	I	F	P	V	E	T	I	D	E
Template Known Secondary structure										T					T	T									T	T	S	B					S													T								G	G	G	G	G	G			.							T	T							S	B
Template Predicted Secondary structure																																																														.
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
		766	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	L	A	L	Q	N	E	P	S	G	M	Q	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	E	I	A	L	E	E	S	E	K	K	R	E	L	L
Template Known Secondary structure							B			S
Template Predicted Secondary structure
Template SS confidence
		609	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.