Job Description P0A9M0 Confidence 99.50% Date Thu Jan 5 11:10:41 GMT 2012 Rank 85 Aligned Residues 210 % Identity 20% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.				.	.	390	.	.	.	.	.
Predicted Secondary structure																																																							.	.													.	.	.									.	.
Query SS confidence																																																							.	.													.	.	.									.	.
Query Sequence		D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	.	.	K	Y	V	R	M	A	L	G	G	V	R	D	.	.	.	E	A	E	I	R	G	H	R	.	.
Query Conservation																																																							.	.													.	.	.									.	.
Alig confidence																											.	.	.	.																									.	.													.	.	.									.	.
Template Conservation																											.	.	.	.
Template Sequence		E	F	V	G	E	H	P	K	I	L	E	I	K	R	L	I	P	K	I	A	K	S	K	A	P	.	.	.	.	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	E	S	E	L	F	G	H	E	K	G
Template Known Secondary structure							S															T	S		S		.	.	.	.							T	T	S	S																S							S	S	S	S		T	T	T										S
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
				396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	T	Y	I	G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N
Query Conservation		.	.
Alig confidence		.	.															.	.	.	.	.	.														.	.	.	.														.	.	.
Template Conservation																		.	.	.	.	.	.														.	.	.	.														.	.	.
Template Sequence		A	F	T	G	A	L	T	R	K	K	G	K	L	E	L	A	.	.	.	.	.	.	D	Q	G	T	L	F	L	D	E	V	G	E	L	.	.	.	.	D	Q	R	V	Q	A	K	L	L	R	V	L	E	.	.	.	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K
Template Known Secondary structure		S	S	S	S												T	.	.	.	.	.	.	T	T	S						T	G	G	G	S	.	.	.	.														.	.	.		S					B	T																S	S
Template Predicted Secondary structure																		.	.	.	.	.	.														.	.	.	.														.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.							.	.	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		474	.	.								.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.				.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.																												.	.	.
Query SS confidence					.	.	.	.	.	.	.																												.	.	.
Query Sequence		S	M	N	.	.	.	.	.	.	.	I	P	A	P	L	L	D	R	M	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	.	.	.	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G
Query Conservation					.	.	.	.	.	.	.																												.	.	.
Alig confidence					.	.	.	.	.	.	.																												.	.	.													.	.															.
Template Conservation																																																						.	.															.
Template Sequence		N	L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y	Y	R	L	S	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L	K	K	F	A	K	E	Y	K	.	.	K	N	C	F	E	L	S	E	E	T	K	E	Y	L	.	X	K	Q	E	W	K	G	N	V	R	E
Template Known Secondary structure									T	T	S	S									T	S								G	G	G	S	T	T																	T	T	.	.						B									.		T				T	T
Template Predicted Secondary structure																																																						.	.															.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350
		544	.	.	.	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	R	E	I	S	K	L	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	N	L	I	E	R	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions