Job Description P0A9M0 Confidence 98.34% Date Thu Jan 5 11:10:41 GMT 2012 Rank 108 Aligned Residues 121 % Identity 12% Template c3co5B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae Resolution 2.40 Å

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		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.				.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence		R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	.	.	.	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	M	P	G	K
Query Conservation																																																	.	.	.
Alig confidence																					.	.	.	.																									.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	I	Q	E	X	N	R	E	V	E	A	A	A	K	R	T	S	P	.	.	.	.	V	F	L	T	G	E	A	G	S	P	F	E	T	V	A	R	Y	F	H	K	N	G	T	P	W	V	S	P	A	R	V	E	Y	L	I	D	X	P	X	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																T		S	S		.	.	.	.							T	T									T	T			T	T	S						S	S	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.					.	.	.	480	.
Predicted Secondary structure																																																																									.	.	.	.
Query SS confidence																																																																									.	.	.	.
Query Sequence		L	I	Q	K	M	A	K	V	G	V	K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	.	.	.	I	P	A	P	L
Query Conservation																																																																									.	.	.	.
Alig confidence		.	.							.	.														.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation		.	.							.	.														.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	E	L	L	Q	K	A	.	.	E	G	G	V	L	Y	V	G	D	I	A	Q	Y	.	.	.	.	S	R	N	I	Q	T	G	I	T	F	I	I	G	K	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	C	R	V	R	V	I	A	S	C	S	Y	A	A	G	S	D	S	C	E	E	K	L
Template Known Secondary structure		.	.						T	.	.	T	T	S								T	T		.	.	.	.																T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T											T	T	T
Template Predicted Secondary structure		.	.							.	.														.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				198	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.															.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		482	.	.	.			.	.	.	.	490	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		L	D	R	M	.	.	E	V	I	R	L	S	G	Y
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		A	G	L	F	S	E	S	V	V	R	I	P	P	L
Template Known Secondary structure					S	S	S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions