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Job DescriptionP0A9M0
Confidence99.93%DateThu Jan 5 11:10:41 GMT 2012
Rank18Aligned Residues222
% Identity22%Templatec3cf1C_
PDB info PDB header:transport proteinChain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx
Resolution4.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   322.......330........ .340.........350.........360.........370.........380.........390....
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Query Sequence  TDHYGLERVKDRILEYL. . . . . . . AVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH
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Template Sequence  EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT. . . . . . .
Template Known Secondary structure  TTT
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   477..480.........490.........500.........510.........520.........530.........540.........
 
   395....400.........410........ .420.........430..... ....440.........450.........460...
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Query Sequence  RRTYIGSMPGKLIQKMAKVGVKNP. LFLLDEIDKMSSDMRGD. . . . . . . . . . PASALLEVLDPEQNVAFSDHYLEVDYDL
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Template Sequence  . . MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD. . . . . . . . . . . . . GMSTK
Template Known Secondary structure  ..TTT
TTTTTTTT
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SSGGGGTTTT
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Query Sequence  SDVMFVATSNSMN. IPAPLLD. . RMEV. IRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA
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Template Sequence  KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD. . . . . . . . . . . LEFLAKMTNGFS
Template Known Secondary structure  SS
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GGG

GGGTSTTTS





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   615....620.........630.........640.........650.........660.........670. ........680...
 
   540.........550.........560... ......570.........580.
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Query Sequence  GVRGLEREISKLCRKAVKQLLLDK. . SLKHIEINGDNLHDYLGV
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Template Sequence  GA. . . . . DLTEICQRACKLAIRESIESEIVPEIRRDHFEEAMRF
Template Known Secondary structure  .....TT



B
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   684. ....690.........700.........710.........720..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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