Job Description P0A9M0 Confidence 99.93% Date Thu Jan 5 11:10:41 GMT 2012 Rank 18 Aligned Residues 222 % Identity 22% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.								.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.
Query Sequence		T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	.	.	.	.	.	.	.	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H
Query Conservation																			.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	Q	A	N	F	I	S	I	K	G	P	E	L	L	T	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T		S																								T	S						S								T	T	S													T	T														.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.											.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure																										.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		R	R	T	Y	I	G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	.	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	.	.	.	.	.	.	.	.	.	.	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L
Query Conservation																										.																		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																							.																		.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	S	T	K
Template Known Secondary structure		.	.			T	T	T		T							T	T	T	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		T	T
Template Predicted Secondary structure		.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.														610	.	.	.	.
		464	.	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480	.	.	.			.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.								.	.					.
Query SS confidence															.								.	.					.
Query Sequence		S	D	V	M	F	V	A	T	S	N	S	M	N	.	I	P	A	P	L	L	D	.	.	R	M	E	V	.	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A
Query Conservation															.								.	.					.
Alig confidence															.								.	.					.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	V	F	I	I	G	A	T	N	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	P	L	P	D	E	K	S	R	V	A	I	L	K	A	N	L	R	K	S	P	V	A	K	D	V	D	.	.	.	.	.	.	.	.	.	.	.	L	E	F	L	A	K	M	T	N	G	F	S
Template Known Secondary structure		S	S								S		G	G	G			G	G	G	T	S	T	T	T	S											T	T										T	T	T	S		B		S	S			.	.	.	.	.	.	.	.	.	.	.					T	T	T		S	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.												.	.	.	.	.	.	.	.	680	.	.	.
		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.			.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		G	V	R	G	L	E	R	E	I	S	K	L	C	R	K	A	V	K	Q	L	L	L	D	K	.	.	S	L	K	H	I	E	I	N	G	D	N	L	H	D	Y	L	G	V
Query Conservation																										.	.
Alig confidence				.	.	.	.	.																		.	.
Template Conservation				.	.	.	.	.
Template Sequence		G	A	.	.	.	.	.	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E	S	E	I	V	P	E	I	R	R	D	H	F	E	E	A	M	R	F
Template Known Secondary structure				.	.	.	.	.											T	T														B										T	T
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
		684	.						.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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