Job Description P0A9M0 Confidence 99.45% Date Thu Jan 5 11:10:41 GMT 2012 Rank 89 Aligned Residues 206 % Identity 18% Template c3bosA_ PDB info PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution Resolution 1.75 Å

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		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I
Query Conservation
Alig confidence																						.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template Sequence		F	T	S	Y	Y	P	G	N	D	E	L	I	G	A	L	K	S	A	A	S	.	.	.	.	.	.	G	D	G	V	Q	A	I	Y	L	W	G	P	V	K	S	G	R	T	H	L	I	H	A	A	C	A	R	A	N	E	L	E	R	R	S	F	Y	I	P	L	G	I	H	A	S	I	S	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	S																	.	.	.	.	.	.	T		S		S							S	T	T	S	S															T	T								G	G	G	G	G	G	S		.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.																																																.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.							.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence		.	.	.	.	.	.	.	.																								.	.														.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation		.	.	.	.	.	.	.	.																								.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	T	A	L	L	E	G	L	E	Q	F	D	L	I	C	I	D	D	V	D	A	V	A	G	.	.	H	P	L	W	E	E	A	I	F	D	L	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	R	V	A	E	Q	K	R	G	S	L	I	V	S	A	S	A	S	P	X	E	A	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	G	G	G	G	T	T	G	G	G	S	S						T	G	G	G	G	T	T	.	.														.	.	.	.	.	.	.	.	.	.	.	.							S								S	S		T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																								.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130													.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
			477	.	.	480	.	.	.	.	.	.				.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure		.											.	.	.
Query SS confidence		.											.	.	.
Query Sequence		.	I	P	A	P	L	L	D	R	M	E	.	.	.	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K	L	C
Query Conservation		.											.	.	.
Alig confidence		.											.	.	.																				.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.																							.	.
Template Sequence		F	V	L	P	D	L	V	S	R	X	H	W	G	L	T	Y	Q	L	Q	P	X	X	D	D	E	K	L	A	A	L	Q	R	R	.	.	.	.	.	.	.	.	.	.	A	A	X	R	G	L	Q	L	P	E	D	V	G	R	F	L	L	N	R	X	A	R	.	.	D	L	R	T	L	F	D	V	L	D	R	L	D
Template Known Secondary structure														S										G	G	G									.	.	.	.	.	.	.	.	.	.				T	T															T	T	T	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.																							.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.											.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	A	V	K	Q	L	L	L	D	K	S	L	K	H	I	E	I	N	G	D	N	L	H	D	Y	L	G
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.
Template Sequence		K	A	S	X	V	H	Q	R	K	.	.	.	.	.	.	.	.	L	T	I	P	F	V	K	E	X	L	R
Template Known Secondary structure								T			.	.	.	.	.	.	.	.											T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.									230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions