Job Description P0A9M0 Confidence 99.87% Date Thu Jan 5 11:10:41 GMT 2012 Rank 25 Aligned Residues 212 % Identity 17% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.							.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.
Query Sequence		T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	.	.	.	.	.	.	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R
Query Conservation																											.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	N	S	T	F	F	S	I	S	S	S	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	S		S												T							G	G	G	S		S	S					S							S	T	T	S													T	T	T									S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		R	T	Y	I	G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	.	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S
Query Conservation																									.
Alig confidence		.	.																						.															.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																					.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	D	L	V	S	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	S	E	A	A	R	.	.	R	I	K	T	E	F	L	V	Q	M	Q	.	.	.	.	.	.	.	.	.	.	.	.	G	V	G	V	D	N	D	G	I	L	V	L	G	A	T	N	I
Template Known Secondary structure		.	.	T	T	T				T												T		S							S									.	.												.	.	.	.	.	.	.	.	.	.	.	.	T	S	S	S			T	T								S
Template Predicted Secondary structure		.	.																																					.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.													250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		475	.		.	.	.	480	.	.	.	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure				.												.
Query SS confidence				.												.
Query Sequence		M	N	.	I	P	A	P	L	L	D	R	M	E	V	.	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K	L	C
Query Conservation				.												.
Alig confidence				.												.																			.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		P	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	A	H	A	R	A	A	M	F	R	L	H	.	.	.	.	.	.	.	.	.	.	L	G	S	T	Q	N	S	L	T	E	A	D	F	Q	E	L	G	R	K	T	D	G	Y	S	G	A	.	D	I	S	I	I	V	R	D	A	L
Template Known Secondary structure			T	T	S									S										S											.	.	.	.	.	.	.	.	.	.		T	T			B													S			S					.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.											.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	A	V	K	Q	L	L	L	D	K	S	L	K	H	I	E	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q	P	V	R	K	V	Q	S	A	T	H	F	K	K	V	R	G	P
Template Known Secondary structure										S		S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions