Job Description P0A9M0 Confidence 99.47% Date Thu Jan 5 11:10:41 GMT 2012 Rank 88 Aligned Residues 204 % Identity 18% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.						.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	.	.	.	.	.	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	M	P	G	K	L	I
Query Conservation																																											.	.	.	.	.
Alig confidence																																											.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.
Template Sequence		S	F	A	Y	H	A	A	L	E	V	A	K	H	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F	L	N	.	.	.	.	.	.	.	.	.	D	L	V	D	S	M	K	E	G	K	L
Template Known Secondary structure														S	T	T	T	S								S	S	S	S	S																S	S	S	S													.	.	.	.	.	.	.	.	.								T	S
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.										.	.	.	.	.	.	180	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.					.	.	.	480	.	.
Predicted Secondary structure													.																																																											.	.	.	.
Query SS confidence													.																																																											.	.	.	.
Query Sequence		Q	K	M	A	K	V	G	V	K	N	P	.	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	.	.	.	I	P	A	P	L	L
Query Conservation													.																																																											.	.	.	.
Alig confidence													.													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																										.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	.	.	K	T	G	V	Q	T	E	L	F	H	T	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	H	D	S	G	K	Q	I	V	I	C	S	D	R	E	P	Q	K	L	S	E	F	Q	D	R	L	V
Template Known Secondary structure									T	T	T		S							G	G	G	G	T	T	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T								S	S		T	T	T		S	S
Template Predicted Secondary structure																										.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.														.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		483	.	.				.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		D	R	M	.	.	.	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K	L	C	R	K	A	V	K	Q	L
Query Conservation					.	.	.
Alig confidence					.	.	.																									.	.	.	.	.	.	.	.	.	.																			.	.																			.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.																			.	.																			.	.
Template Sequence		S	R	F	Q	M	G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	E	.	.	.	.	.	.	.	.	.	.	H	G	E	L	P	E	E	V	L	N	F	V	A	E	N	V	D	D	.	.	N	L	R	R	L	R	G	A	I	I	K	L	L	V	Y	K	E	T	.	.
Template Known Secondary structure						S	S																									.	.	.	.	.	.	.	.	.	.	T					T	T											S	.	.																			.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.																			.	.																			.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.											280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	K	S	L	K	H	I	E	I	N	G	D	N	L	H	D	Y	L	G
Query Conservation
Alig confidence		.	.	.	.					.	.
Template Conservation		.	.	.	.					.	.
Template Sequence		.	.	.	.	T	G	K	E	.	.	V	D	L	K	E	A	I	L	L	L	K
Template Known Secondary structure		.	.	.	.	S	S	S		.	.										T	G
Template Predicted Secondary structure		.	.	.	.					.	.
Template SS confidence
						316	.	.	.			320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions