Job Description P0A9M0 Confidence 99.76% Date Thu Jan 5 11:10:41 GMT 2012 Rank 40 Aligned Residues 220 % Identity 20% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.								.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.
Query Sequence		H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	.	.	.	.	.	.	.	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R
Query Conservation																	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.																																																		.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		I	G	A	L	E	D	I	R	E	E	L	T	M	A	I	L	A	P	V	R	N	P	D	Q	F	K	A	L	G	L	V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	S	G	L	N	F	I	S	V	K	G	P	E	L	L	N	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T					S							T	T					S						S	S	T	T	S													T	T								T	T	T	T		S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		T	Y	I	G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	.	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M
Query Conservation																								.
Alig confidence																								.													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	Y	V	G	E	S	E	R	A	V	R	Q	V	F	Q	R	A	K	N	S	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	.	.	S	V	R	V	V	N	Q	L	L	T	E	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	P
Template Known Secondary structure		S	T	T																	T		S							T		T	T	T			.	.		T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	T			S	T	T									S		G
Template Predicted Secondary structure																																					.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.			.	690	.	.	.	.	.	.	.	.	.	700	.														.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
		476		.	.	.	480	.	.	.			.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure			.								.	.					.
Query SS confidence			.								.	.					.
Query Sequence		N	.	I	P	A	P	L	L	D	.	.	R	M	E	V	.	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K	L
Query Conservation			.								.	.					.
Alig confidence			.								.	.					.																						.	.	.																										.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.																										.	.	.	.	.	.	.	.
Template Sequence		D	I	I	D	P	A	I	L	R	P	G	R	L	D	K	T	L	F	V	G	L	P	P	P	A	D	R	L	A	I	L	K	T	I	T	K	N	.	.	.	G	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	G	D	L	R	C	D	C	Y	T	.	.	.	.	.	.	.	.	G	A	D	L	S	A	L
Template Known Secondary structure		G	G	S						S	T	T	S	S								S														T	T	T	.	.	.	T	B	T	T	B	B		T	T								T		S	G	G	G	S			.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.																										.	.	.	.	.	.	.	.
Template SS confidence
		728	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.				.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.									790	.	.	.	.	.	.
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	R	K	A	V	K	Q	L	L	L	D	K	S	L	K	H	I	E	I	N	G	D	N	L	H	D	Y	L	G	V
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		V	R	E	A	S	I	C	A	L	R	Q	E	M	L	.	.	.	K	V	S	H	K	H	F	E	E	A	F	K	K
Template Known Secondary structure																.	.	.		B										T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		797	.	.	800	.	.	.	.	.	.	.	.	.	810				.	.	.	.	.	.	.	.	.	820	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions