Job Description P0A9M0 Confidence 96.96% Date Thu Jan 5 11:10:41 GMT 2012 Rank 219 Aligned Residues 156 % Identity 21% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		230	.	.	.	.	.	.	.	.	.	240	.	.						.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		L	N	E	Q	M	K	A	I	Q	K	E	L	G	.	.	.	.	.	E	M	D	D	A	P	D	E	N	E	A	L	K	R	K	I	D	A	A	K	M	P	K	E	A	K	E	K	A	E	A	E	L	Q	K	L	K	M	M	S	P	M	S	A	E	A	T	V	V	R	G	Y	I	D	W	M	V	Q	V	P	W	N
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	E	N	L	N	K	A	L	N	K	L	K	A	A	A	F	V	D	K	K	L	I	K	E	V	I	K	D	I	Q	R	A	L	I	Q	A	D	V	N	V	K	L	V	L	K	M	S	K	E	I	E	R	R	A	L	E	E	K	T	P	K	G	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															S	S	S				S	S	T	T														T											T								S	S	S		S	S		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.								.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.				.
Predicted Secondary structure																																											.	.	.	.	.	.	.																													.	.	.
Query SS confidence																																											.	.	.	.	.	.	.																													.	.	.
Query Sequence		A	R	S	K	V	K	K	D	L	R	Q	A	Q	E	I	L	D	T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	.	.	.	.	.	.	.	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	.	.	.	G
Query Conservation																																											.	.	.	.	.	.	.																													.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.																													.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	E	H	I	I	K	I	V	Y	E	E	L	V	K	L	L	G	E	E	A	K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				S								S	S	S										S	S	S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.									.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.						.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.																				.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.																				.	.	.	.	.
Query Sequence		R	K	Y	V	R	M	A	L	G	G	V	R	.	.	.	.	.	.	.	.	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	M	P	G	K	.	.	.	.	.	L	I	Q	K	M	A	K	V	G	V	K	N	P	L	F	L	L	D
Query Conservation														.	.	.	.	.	.	.	.																				.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.											.									.	.	.	.	.										.
Template Conservation																																.																							.
Template Sequence		L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	.	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	.	K	A	D	V	L	I	I	D
Template Known Secondary structure										S				T	T	G	G	G	S	S							S	S				.				S	S	S			S	S	S	T	T							T	T	S	.	S		S
Template Predicted Secondary structure																																.																							.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions