Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9M0
Confidence97.39%DateThu Jan 5 11:10:41 GMT 2012
Rank157Aligned Residues162
% Identity19%Templatec2iy3A_
PDB info PDB header:rna-bindingChain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
Resolution16.00 Å

  Insertion relative to template
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  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   230.........240...... ...250.........260.........270.........280.........290.........300........
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Query Sequence  LNEQMKAIQKELGEMDD. APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSK
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Template Sequence  LSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . V
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   5....10.........20.........30.........40.........50. .
 
   309310.........320.........330.........340. ........350.........360.........370... ......380
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Query Sequence  VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQ. . . . . SRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT. . . GRKYVRM
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Template Sequence  ERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV
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   53......60.........70.........80.........90.........100.........110.........120.........130..
 
   381..... ...390..... ....400.........410........ .420...
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Query Sequence  ALGGVR. . . . . . . . DEAEIRGHR. . . RTYIGSMPGKLIQKMAKVGVKNP. LFLLD
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Template Sequence  AADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVD
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   133......140.........150.........160.........170.........180.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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