Job Description P0A9M0 Confidence 98.09% Date Thu Jan 5 11:10:41 GMT 2012 Rank 112 Aligned Residues 141 % Identity 14% Template c2gnoA_ PDB info PDB header:replication Chain: A: PDB Molecule:dna polymerase iii, gamma subunit-related protein; PDBTitle: crystal structure of a dna polymerase iii, gamma subunit-related2 protein (tm0771) from thermotoga maritima msb8 at 2.00 a resolution Resolution 2.00 Å

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		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.							.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																																						.	.	.	.	.	.												.
Query SS confidence																																						.	.	.	.	.	.												.
Query Sequence		V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	.	.	.	.	.	.	K	Y	V	R	M	A	L	G	G	V	R	.	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	M	P	G	K	L	I	Q	K	M	A	K
Query Conservation																																						.	.	.	.	.	.												.
Alig confidence																																						.	.	.	.	.	.												.							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	R	I	I	E	K	S	E	G	I	S	I	L	I	N	G	E	D	L	S	Y	P	R	E	V	S	L	E	L	P	E	Y	V	E	K	F	P	P	K	A	S	D	V	L	E	I	D	P	E	G	E	N	I	G	I	D	D	I	R	.	.	.	.	.	.	.	.	.	.	.	.	T	I	K	D	F	L	N	Y
Template Known Secondary structure								T		S	S								S	S	S	S															T	S				T	T	T							S	S	S		B							.	.	.	.	.	.	.	.	.	.	.	.							T	S
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.													.	.	.	.	80	.	.	.
		413	.	.	.	.	.			.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		V	G	V	K	N	P	.	.	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	I	P	A	P	L	L	D	R	M	E	V	I	R	L
Query Conservation								.	.
Alig confidence								.	.											.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	P	E	L	Y	T	R	K	Y	V	I	V	H	D	C	E	R	X	.	.	.	.	T	Q	Q	A	A	N	A	F	L	K	A	L	E	E	P	P	E	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	V	L	N	T	R	R	W	H	Y	L	L	P	T	I	K	S	R	V	F	R	V	V	V
Template Known Secondary structure				S	S	S	S	S						T	T	G	G	G	B	.	.	.	.								T						S			T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.							S		G	G	G	S						T	T	S
Template Predicted Secondary structure																				.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120															.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	P	K	E	F	R	D	L	V	K	E	K	I	G	D	L	W	E	E
Template Known Secondary structure																T	T
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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