Job Description P0A9M0 Confidence 99.63% Date Thu Jan 5 11:10:41 GMT 2012 Rank 65 Aligned Residues 207 % Identity 18% Template c2chgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Resolution 2.1 Å

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		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S
Query Conservation
Alig confidence																				.	.	.	.	.	.																																																	.	.	.
Template Conservation																				.	.	.	.	.	.																																																	.	.	.
Template Sequence		D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	.	.	.	.	.	.	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	.	.	.	D	V	V	R	H
Template Known Secondary structure		G	G			S														.	.	.	.	.	.	T	T									S		T	T	S	S														G	G	G	T	G	G	G						T	T		T	T			.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.																																																	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.							.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.	.	.	480
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	.	M	N	I	P	A	P
Query Conservation																																																																											.
Alig confidence																													.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation																													.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	K	E	F	A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	.	.	.	.	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	C	R	F	I	L	S	C	N	Y	V	S	R	I	I	E	P
Template Known Secondary structure								T	S			S	T	T		S								T	G	G	G	S	.	.	.	.																T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								S		G	G	G	S
Template Predicted Secondary structure																													.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130																.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	R	M	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K	L	C	R	K	A	V	K	Q	L	L
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.																	.	.																.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.																	.	.																.	.	.	.	.	.	.
Template Sequence		I	Q	S	R	C	A	V	F	R	F	K	P	V	P	K	E	A	M	K	K	R	L	L	E	I	C	E	K	E	.	.	.	.	.	.	.	.	.	.	G	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	.	.	G	G	D	F	R	K	A	I	N	A	L	Q	G	A	A	.	.	.	.	.	.	.	A
Template Known Secondary structure					T																										.	.	.	.	.	.	.	.	.	.	T																.	.	T	T														.	.	.	.	.	.	.	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.																	.	.																.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.											.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.								.
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	K	S	L	K	H	I	E	I	N	G	D	N	L	H	D	Y	L	G
Query Conservation
Alig confidence					.	.	.	.	.
Template Conservation					.	.	.	.	.
Template Sequence		I	G	E	.	.	.	.	.	V	V	D	A	D	T	I	Y	Q	I	T	A
Template Known Secondary structure		T		S	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
		210	.	.						.	.	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions