Job Description P0A9M0 Confidence 99.68% Date Thu Jan 5 11:10:41 GMT 2012 Rank 57 Aligned Residues 213 % Identity 17% Template c2c99A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf Resolution 1.9 Å

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		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.				.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	.	.	.	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G
Query Conservation																																																						.	.	.
Alig confidence																										.	.	.	.																									.	.	.
Template Conservation																										.	.	.	.
Template Sequence		L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	.	.	.	.	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G	H	E	A	K
Template Known Secondary structure																				T	T	S		S		.	.	.	.							T	T	S	S											T	S	T	T	T	T	S							G	G	G	S												B
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence											.	.	.	.	.	.														.	.	.	.																						.	.	.	.																				.	.	.	.
Template Conservation											.	.	.	.	.	.														.	.	.	.																						.	.	.	.
Template Sequence		R	H	P	G	R	F	E	R	A	.	.	.	.	.	.	D	G	G	T	L	F	L	D	E	L	A	T	A	.	.	.	.	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	.	.	.	.	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M	V
Template Known Secondary structure			B							T	.	.	.	.	.	.	T	T	S						S	G	G	G	S	.	.	.	.															S						S	.	.	.	.	S	S														S	S
Template Predicted Secondary structure											.	.	.	.	.	.														.	.	.	.																						.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.							100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
						477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.			.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure		.	.	.	.																																															.	.
Query SS confidence		.	.	.	.																																															.	.
Query Sequence		.	.	.	.	I	P	A	P	L	L	D	R	M	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	.	.	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K
Query Conservation		.	.	.	.																																															.	.
Alig confidence		.	.	.	.																																															.	.											.
Template Conservation																																																																.
Template Sequence		N	E	G	T	F	R	A	D	L	L	D	R	L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	.	N	Y	R	W	P	G	N	I	R	E	L	K	N	V	V	E	R
Template Known Secondary structure				T	S	S										S								G	G	G	S																			T	T		S	S				B										.		S			T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		551	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	R	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	Y	R	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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