Job Description P0A9M0 Confidence 99.65% Date Thu Jan 5 11:10:41 GMT 2012 Rank 62 Aligned Residues 194 % Identity 17% Template c1sxjE_ PDB info PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S
Query Conservation
Alig confidence															.	.	.	.	.																																																											.	.	.
Template Conservation															.	.	.	.	.																																																											.	.	.
Template Sequence		N	A	L	S	H	N	E	E	L	T	N	F	L	.	.	.	.	.	K	S	L	S	D	Q	P	R	D	L	P	H	L	L	L	Y	G	P	N	G	T	G	K	K	T	R	C	M	A	L	L	E	S	I	F	G	P	G	V	Y	R	N	V	V	S	S	P	Y	H	L	E	I	T	P	S	N	D	R	.	.	.	I
Template Known Secondary structure		G	G			S									.	.	.	.	.		T	T	T	T		T	T										S	T	T	S	S							T						S		T	T									S	S											.	.	.
Template Predicted Secondary structure															.	.	.	.	.																																																											.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	I	P	A	P
Query Conservation																																																																													.
Alig confidence																													.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation																													.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	Q	E	L	L	K	E	V	A	Q	M	E	Q	R	Y	K	C	V	I	I	N	E	A	N	S	L	.	.	.	.	T	K	D	A	Q	A	A	L	R	R	T	M	E	K	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	I	R	L	I	M	V	C	D	S	M	S	P	I	I	A	P
Template Known Secondary structure											T	T	T	T											T	T	S	S	.	.	.	.															S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								S		S		S	S
Template Predicted Secondary structure																													.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150																.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	R	M	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K	L	C	R
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																														.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		I	K	S	Q	C	L	L	I	R	C	P	A	P	S	D	S	E	I	S	T	I	L	S	D	V	V	T	N	.	.	.	.	.	.	.	.	.	E	R	I	Q	L	E	T	K	D	I	L	K	R	I	A	Q	A	S	N	.	.	G	N	L	R	V	S	L	L	M	L	E	S	M	A	L
Template Known Secondary structure				T	T	S																								.	.	.	.	.	.	.	.	.		T						S											T	.	.	T										T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.										.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions