Job Description P0A9M0 Confidence 99.48% Date Thu Jan 5 11:10:41 GMT 2012 Rank 86 Aligned Residues 169 % Identity 20% Template c1sxjD_ PDB info PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		302	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.							.
Predicted Secondary structure				.																																																																							.	.	.	.	.	.
Query SS confidence				.																																																																							.	.	.	.	.	.
Query Sequence		P	W	.	N	A	R	S	K	V	K	K	D	L	R	Q	A	Q	E	I	L	D	T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	.	.	.	.	.	.	G
Query Conservation				.																																																																							.	.	.	.	.	.
Alig confidence				.				.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.																														.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Sequence		P	W	V	E	K	Y	.	.	.	.	.	.	.	.	.	.	R	P	K	N	L	D	E	V	T	A	Q	D	H	A	V	T	V	L	K	K	T	L	.	.	.	.	.	.	K	S	A	N	L	P	H	M	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	L	A	L	T	K	E	L	Y	G	P	D	L	M	K
Template Known Secondary structure							T	.	.	.	.	.	.	.	.	.	.			S	S	T	T	T			S			T	T								T	.	.	.	.	.	.	T		T	T									S	T	T	S	S																			T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.											.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.							.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.			.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	.	.	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F
Query Conservation																																														.	.
Alig confidence																																														.	.											.	.	.	.																	.	.	.	.
Template Conservation																																																										.	.	.	.																	.	.	.	.
Template Sequence		S	R	I	L	E	L	N	A	S	D	E	R	G	I	S	I	V	R	E	K	V	K	N	F	A	R	L	T	V	S	K	P	S	K	H	D	L	E	N	Y	P	C	P	P	Y	K	I	I	I	L	D	E	A	D	S	M	.	.	.	.	T	A	D	A	Q	S	A	L	R	R	T	M	E	T	Y	S	.	.	.	.
Template Known Secondary structure		T	S						S	S	S								T	T								S							T	T					S				S							T	T	G	G	G	S	.	.	.	.															T	T	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.																	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	I	P	A	P	L	L	D	R	M	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H
Query Conservation																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	G	V	T	R	F	C	L	I	C	N	Y	V	T	R	I	I	D	P	L	A	S	Q	C	S	K	F	R	F	K	A	L	D	A	S	N	A	I	D	R	L	R	F	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T	T								S		G	G	G	S								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions