Job Description P0A9M0 Confidence 99.55% Date Thu Jan 5 11:10:41 GMT 2012 Rank 79 Aligned Residues 206 % Identity 21% Template c1sxjB_ PDB info PDB header:replication Chain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		299	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		V	Q	V	P	W	.	N	A	R	S	K	V	K	K	D	L	R	Q	A	Q	E	I	L	D	T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	K	Y
Query Conservation							.
Alig confidence							.									.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Sequence		L	Q	L	P	W	V	E	K	Y	R	P	Q	V	L	.	.	.	.	.	.	.	.	.	.	S	D	I	V	G	N	K	E	T	I	D	R	L	Q	Q	I	A	K	.	.	.	.	.	.	D	G	N	M	P	H	M	I	I	S	G	M	P	G	I	G	K	T	T	S	V	H	C	L	A	H	E	L	L	G	R	S
Template Known Secondary structure										T			S	S	G	.	.	.	.	.	.	.	.	.	.	G	G			S		T												.	.	.	.	.	.	S											S	T	T	S	S														G	G	G
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20											.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.							.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	.	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y
Query Conservation																																											.
Alig confidence																		.	.	.																							.											.	.	.	.																				.	.	.	.	.
Template Conservation																		.	.	.																																		.	.	.	.																				.	.	.	.	.
Template Sequence		Y	A	D	G	V	L	E	L	N	A	S	D	D	R	G	I	.	.	.	D	V	V	R	N	Q	I	K	H	F	A	Q	K	K	L	H	L	P	P	G	K	H	K	I	V	I	L	D	E	A	D	S	M	.	.	.	.	T	A	G	A	Q	Q	A	L	R	R	T	M	E	L	Y	S	N	S	T	.	.	.	.	.
Template Known Secondary structure											T	T	S			S		.	.	.					T														T	T									S	G	G	G	S	.	.	.	.							T	T							T	T	T	T		.	.	.	.	.
Template Predicted Secondary structure																		.	.	.																																		.	.	.	.																				.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.				.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	I	P	A	P	L	L	D	R	M	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.																					.
Template Conservation		.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		.	.	.	.	.	.	.	.	.	R	F	A	F	A	C	N	Q	S	N	K	I	I	E	P	L	Q	S	Q	C	A	I	L	R	Y	S	K	L	S	D	E	D	V	L	K	R	L	L	Q	I	.	.	.	.	.	.	.	.	.	.	I	K	L	E	D	V	K	Y	T	N	D	G	L	E	A	I	I	F	T	A	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.							S		G	G	G	S						T	T	S																					.	.	.	.	.	.	.	.	.	.					T			B													.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
											139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.											.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	A	G	V	R	G	L	E	R	E	I	S	K	L	C	R	K	A	V	K
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	E	G	D	M	R	Q	A	I	N	N	L	Q	S	T	V	A
Template Known Secondary structure		.	.	.	.	.	T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions