Job Description P0A9M0 Confidence 99.63% Date Thu Jan 5 11:10:41 GMT 2012 Rank 63 Aligned Residues 217 % Identity 14% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	.	.	.	T	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I
Query Conservation																																																				.	.	.
Alig confidence																											.	.	.	.																						.	.	.
Template Conservation																											.	.	.	.
Template Sequence		H	M	I	G	S	S	P	A	M	Q	H	L	L	N	E	I	A	M	V	A	P	S	D	A	T	.	.	.	.	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K
Template Known Secondary structure																						S	T	T			.	.	.	.							T	T	S	S												S	S		S	S	S								T	T											T				S
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																.	.														.	.	.	.																						.	.	.	.																				.	.	.
Template Conservation																.	.														.	.	.	.																						.	.	.	.
Template Sequence		G	A	F	T	K	R	R	E	G	R	F	V	E	A	.	.	D	G	G	T	L	F	L	D	E	I	G	D	I	.	.	.	.	S	P	L	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	.	.	.	.	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	E	E
Template Known Secondary structure		S	S								T	T	G	G	G	.	.	T	T	S							G	G	G		.	.	.	.														S	S					S	S	.	.	.	.	S															S	S
Template Predicted Secondary structure																.	.														.	.	.	.																						.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
							477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.		.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure		.	.	.	.	.																																															.
Query SS confidence		.	.	.	.	.																																															.
Query Sequence		.	.	.	.	.	I	P	A	P	L	L	D	R	M	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	.	V	D	D	S	A	I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K
Query Conservation		.	.	.	.	.																																															.
Alig confidence		.	.	.	.	.																																															.												.
Template Conservation																																																																	.
Template Sequence		V	S	A	G	R	F	R	Q	D	L	Y	Y	R	L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	.	Y	D	W	P	G	N	I	R	E	L	E	N	A	I	E	R
Template Known Secondary structure					T	S	S										S								G	G	G	G	G	G	G																T	T						B											.				T	T
Template Predicted Secondary structure																																																																	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.		.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		551	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	V	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions