Job Description P0A9M0 Confidence 99.52% Date Thu Jan 5 11:10:41 GMT 2012 Rank 82 Aligned Residues 227 % Identity 22% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.				.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																																																				.	.	.
Query SS confidence																																																																				.	.	.
Query Sequence		K	V	K	K	D	L	R	Q	A	Q	E	I	L	D	T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	.	.	.	G	R	K	Y	V	R	M	A	L	G	G
Query Conservation																																																																				.	.	.
Alig confidence																																										.	.	.	.																							.	.	.
Template Conservation																																										.	.	.	.
Template Sequence		K	E	N	E	L	L	R	R	E	K	D	L	K	E	E	E	Y	V	F	E	S	P	K	M	K	E	I	L	E	K	I	K	K	I	S	C	A	E	C	P	.	.	.	.	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S
Template Known Secondary structure													T	T								S														T	T			S		.	.	.	.						S	T	T	S	S												S	T	T	T	T	S							T	T	T
Template Predicted Secondary structure																																										.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		385	.	.				.	.	390	.	.	.	.	.	.					.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.										.	.	.	.
Query SS confidence					.	.	.										.	.	.	.
Query Sequence		V	R	D	.	.	.	E	A	E	I	R	G	H	R	R	.	.	.	.	T	Y	I	G	S	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L
Query Conservation					.	.	.										.	.	.	.
Alig confidence					.	.	.										.	.	.	.														.	.	.	.	.	.														.	.	.	.														.	.	.
Template Conservation																																		.	.	.	.	.	.														.	.	.	.														.	.	.
Template Sequence		I	P	R	D	I	F	E	A	E	L	F	G	Y	E	K	G	A	F	T	G	A	V	S	S	K	E	G	F	F	E	L	A	.	.	.	.	.	.	D	G	G	T	L	F	L	D	E	I	G	E	L	.	.	.	.	S	L	E	A	Q	A	K	L	L	R	V	I	E	.	.	.	S	G	K	F	Y	R	L	G	G
Template Known Secondary structure		S												B		T	T	S	S	T	T			S		B							T	.	.	.	.	.	.	T	T	S						S	G	G	G		.	.	.	.														.	.	.		S					B	T
Template Predicted Secondary structure																																		.	.	.	.	.	.														.	.	.	.														.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230							.	.	.	.	.	.	.	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.				.	.	.	260	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.								.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.				.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																												.	.	.
Query SS confidence																					.	.	.	.	.	.	.																												.	.	.
Query Sequence		E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	.	.	.	.	.	.	.	I	P	A	P	L	L	D	R	M	E	V	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	.	.	.	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A
Query Conservation																					.	.	.	.	.	.	.																												.	.	.
Alig confidence																					.	.	.	.	.	.	.																												.	.	.															.	.
Template Conservation																																																																								.	.
Template Sequence		R	K	E	I	E	V	N	V	R	I	L	A	A	T	N	R	N	I	K	E	L	V	K	E	G	K	F	R	E	D	L	Y	Y	R	L	G	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D	I	I	P	L	A	N	H	F	L	K	K	F	S	R	K	Y	A	K	E	.	.	V	E	G	F	T	K	S	A
Template Known Secondary structure			S													S	S								T	T	S	S									T	T								G	G	G																				T	T			.	.
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340	.	.	.
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	G	I	I	R	Y	Y	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K	L	C	R	K
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		Q	E	L	L	.	L	S	Y	P	W	Y	G	N	V	R	E	L	K	N	V	I	E	R	A	V	L	F
Template Known Secondary structure						.			S			T	T
Template Predicted Secondary structure						.
Template SS confidence
		344	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions