Job Description P0A9M0 Confidence 99.76% Date Thu Jan 5 11:10:41 GMT 2012 Rank 43 Aligned Residues 191 % Identity 18% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	G	R	K	Y	V	R	M	A	L	G	G	V	R	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	M	P	G	K	L
Query Conservation
Alig confidence																																																																.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.
Template Sequence		V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	.	.	.	.	.	.	.	.	F	S	E	T	A	K	C	Q	A	M
Template Known Secondary structure																				S	S		S									S	T	T	S	S															S							G	G	G	S	T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.									.	.	.	.	580	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.							.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.																			.	.	.	.	.	.
Query SS confidence														.																			.	.	.	.	.	.
Query Sequence		I	Q	K	M	A	K	V	G	V	K	N	P	.	L	F	L	L	D	E	I	D	K	M	S	S	D	M	R	G	D	P	.	.	.	.	.	.	A	S	A	L	L	E	V	L	D	P	E	Q	N	V	A	F	S	D	H	Y	L	E	V	D	Y	D	L	S	D	V	M	F	V	A	T	S	N	S	M	N	I	P	A
Query Conservation														.																			.	.	.	.	.	.
Alig confidence														.																			.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	I	F	D	D	A	Y	K	S	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	.	.	.	.	.	.	.	.	.	.	.	.	K	A	P	P	Q	G	R	K	L	L	I	I	G	T	T	S	R	K	D	V	L	Q
Template Known Secondary structure										T	S	S													T	T		B	T	T	T	T	B													T	T	.	.	.	.	.	.	.	.	.	.	.	.				S	T	T										S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.													.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
		480			.	.	.	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.				.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure			.	.								.																																																	.	.	.
Query SS confidence			.	.								.																																																	.	.	.
Query Sequence		P	.	.	L	L	D	R	M	E	V	.	I	R	L	S	G	Y	T	E	D	E	K	L	N	I	A	K	R	H	L	L	P	K	Q	I	E	R	N	A	L	K	K	G	E	L	T	V	D	D	S	A	I	I	G	I	I	R	Y	Y	.	.	.	T	R	E	A	G	V	R	G	L	E	R	E	I	S	K	L
Query Conservation			.	.								.																																																	.	.	.
Alig confidence			.	.								.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	M	E	M	L	N	A	F	S	T	T	I	H	V	P	N	I	A	T	G	E	Q	L	L	E	A	L	E	L	L	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	D	K	E	R	T	T	I	A	Q	Q	V	K	G	K	K	V	W	I	G	I	K	K	L	L	M	L	I	E	M	S
Template Known Secondary structure			T	T	G	G	G	T	S	S																						T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S													T	T	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.															.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions