Job Description P0A9M0 Confidence 93.96% Date Thu Jan 5 11:10:41 GMT 2012 Rank 408 Aligned Residues 167 % Identity 13% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

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		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	N	E	Q	M	K	A	I	Q	K	E	L	G	E	M	D	D	A	P	D	E	N	E	A	L	K	R	K	I	D	A	A	K	M	P	K	E	A	K	E	K	A	E	A	E	L	Q	K	L	K	M	M	S	P	M	S	A	E	A	T	V	V	R	G	Y	I	D	W	M	V	Q	V	P	W	N	A	R	S	K
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	D	N	L	R	D	T	V	R	K	F	L	T	G	S	S	S	Y	D	K	A	V	E	D	F	I	K	E	L	Q	K	S	L	I	S	A	D	V	N	V	K	L	V	F	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	K	I	K	E	R	L	K	N	E	K	P	P	T	Y	I	E
Template Known Secondary structure															S			S																				T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		V	K	K	D	L	R	Q	A	Q	E	I	L	D	T	D	H	Y	G	L	E	R	V	K	D	R	I	L	E	Y	L	A	V	Q	S	R	V	N	K	I	K	G	P	I	L	C	L	V	G	P	P	G	V	G	K	T	S	L	G	Q	S	I	A	K	A	T	.	.	G	R	K	Y	V	R	M	A	L	G	G	V	R
Query Conservation																																																																			.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																																			.	.	.												.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Sequence		R	R	E	W	F	I	K	.	.	.	.	.	.	.	.	.	.	I	V	Y	D	E	L	S	N	L	F	G	G	D	K	E	P	K	V	I	P	D	K	I	P	Y	V	I	M	L	V	G	V	Q	G	.	.	.	T	T	A	G	K	L	A	Y	F	Y	K	K	K	G	F	K	V	G	L	V	G	A	D	V	Y	R
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.										T	T		S						S		S	S	S	S								S			.	.	.													T	T											S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template SS confidence
		68	.	70	.	.	.	.											.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
										387	.	.	390	.	.	.	.	.	.	.	.	.	400	.				.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																.	.	.																		.
Query SS confidence		.	.	.	.	.	.	.	.																.	.	.																		.
Query Sequence		.	.	.	.	.	.	.	.	D	E	A	E	I	R	G	H	R	R	T	Y	I	G	S	.	.	.	M	P	G	K	L	I	Q	K	M	A	K	V	G	V	K	N	P	.	L	F	L	L	D
Query Conservation		.	.	.	.	.	.	.	.																.	.	.																		.
Alig confidence		.	.	.	.	.	.	.	.																.	.	.																		.
Template Conservation
Template Sequence		P	A	A	L	E	Q	L	Q	Q	L	G	Q	Q	I	G	V	P	V	Y	G	E	P	G	E	K	D	V	V	G	I	A	K	R	G	V	E	K	F	L	S	E	K	M	E	I	I	I	V	D
Template Known Secondary structure																T							T	T																		T	T		S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions