Job Description Q47140 Confidence 12.56% Date Wed Jan 25 15:21:13 GMT 2012 Rank 100 Aligned Residues 146 % Identity 13% Template c3nv0A_ PDB info PDB header:rna binding/protein transport Chain: A: PDB Molecule:nuclear rna export factor 2; PDBTitle: crystal structure and mutational analysis of the nxf2/nxt12 heterodimeric complex from caenorhabditis elegans at 1.84 a3 resolution Resolution 1.84 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.																						.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	E	L	H	H	R	I	S	Q	F	L	F	H	E	A	S	L	L	D	D	W	K	.	.	.	.	F	R	D	W	L	A	Q	L	.	D	E	E	I	R	Y	T	M	R	T	T	V	N	A	Q	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	R	K	G	V
Query Conservation																									.	.	.	.									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.									.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	E	V	R	T	L	V	E	E	F	I	I	T	Y	Y	K	I	Y	D	G	A	D	G	Q	Q	T	R	K	Q	L	L	D	A	Y	D	T	N	N	S	T	F	T	H	T	V	V	C	L	W	D	P	I	K	F	V	M	Y	P	D	S	E	S	Y	R	M	Y	L	R	T	S	H	N	V	L	N	Q	E	Y	F
Template Known Secondary structure		S																				S	T	T					G	G	G	G	G	G	G	B		S	S	S													S	S	S					S											T				G	G	G			T	T
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.							.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.
Query Sequence		Q	P	P	T	T	W	I	F	N	D	T	K	D	Q	L	E	R	R	I	A	R	L	E	T	G	M	A	W	A	E	E	P	P	S	R	T	R	H	L	I	S	N	C	Q	I	S	E	T	D	I	P	N	V	F	A	V	R	V	N	Y	L	L	Y	R	A	.	.	.	.	.	.	Q	K	E	R	D	E	T	F	Y
Query Conservation																																																																			.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	N	R	A	S	R	I	S	H	G	A	M	D	I	V	V	A	L	S	R	L	.	.	.	.	.	.	.	.	.	.	.	P	A	T	I	H	L	M	D	T	F	V	V	D	V	F	L	V	S	A	T	L	L	G	F	T	L	H	G	T	F	R	D	G	P	S	A	I	K	P	E	N	T	E	E	H	D	N
Template Known Secondary structure		T	T	S	S			S															S	.	.	.	.	.	.	.	.	.	.	.							G	G	G										S	S													T					S			S		S	T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310												.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	T	R	F	D	K	V	R	R	L	E	D	D	N	W	R	L	L	E	R	D	I	V	L	D	Q	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	F	T	R	T	F	M	V	A	P	R	G	E	G	K	V	A	I	V	S	D	Q	L	F	I	S	S	M	S
Template Known Secondary structure													S	T	T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions