Job Description P76143 Confidence 94.00% Date Thu Jan 5 12:19:36 GMT 2012
Rank 262 Aligned Residues 89
% Identity 18% Template c3n2xB_
PDB info
PDB header: lyaseChain: B: PDB Molecule: uncharacterized protein yage;
PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate
Resolution 2.20 Å
Show / Hide SS confidence
Show / Hide Conservation and Alignment quality
   
183 . . . . . . 190 . . . . . . . . . 200 . . . .
. . . . . 210 . . . . . .
. . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . .
Predicted Secondary structure  
. . . . . . . . . . . . . .
Query SS confidence  
.
.
.
.
.
.
.
.
.
.
.
.
.
.
Query Sequence  
D Q R Y F S L A T R I A A E M G A Q I I K T .
.
.
.
.
.
.
.
Y Y V E K G F E R I V A .
.
.
.
.
.
G C P V P I V I A G G K K L P E R E A L E M C W Q A I D Q G A S
Query Conservation  
              . . . . . . . .                   . . . . . .                                      
Alig confidence  
. . . . . . . . . . . . . . .
Template Conservation  
                                                                        .                        
Template Sequence  
D K P G T A A L I D D L I K A G V D G L F F L G S G G E F S Q L G A E E R K A I A R F A I D H V D R R V P V L I G T G G .
T N A R E T I E L S Q H A Q Q A G A D
Template Known Secondary structure  
T T S S S T T T T G G G S T T S S S . S T S
Template Predicted Secondary structure  
.
Template SS confidence  
   
32 . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 .
. . . . . . . . 100 . . . . . . . . . 110
 
   
249 250 . . . . . . . . . 260 . . . . . . . . . 270 . .
Predicted Secondary structure  
Query SS confidence  
Query Sequence  
G V D M G R N I F Q S D H P V A M M K A V Q A V
Query Conservation  
                 
Alig confidence  
Template Conservation  
                                   
Template Sequence  
G I V V I N P Y Y W K V S E A N L I R Y F E Q V
Template Known Secondary structure  
S S S
Template Predicted Secondary structure  
Template SS confidence  
   
111 . . . . . . . . 120 . . . . . . . . . 130 . . . .
 
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf ] [Import into BibTeX ]