Return to main results Retrieve Phyre Job Id

Job DescriptionP76143
Confidence82.48%DateThu Jan 5 12:19:36 GMT 2012
Rank340Aligned Residues105
% Identity12%Templatec3l2iB_
PDB info PDB header:lyaseChain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.85 angstrom crystal structure of the 3-dehydroquinate dehydratase2 (arod) from salmonella typhimurium lt2.
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   127..130.... .....140.........150.........160.........170.........180.........190.........200.....
Predicted Secondary structure 

.




















Query SS confidence 







.






































































Query Sequence  MDDAVRLN. SCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY
Query Conservation 

 




.



 

   

  
   
  
  
 
     




      
    
   

  



 







  
Alig confidence 







.










.......









































.









Template Conservation 
         
 




   .......      
          

 
 


  

   

        .  



 


Template Sequence  NRAAVDSGLVDMIDLELFTG. . . . . . . DDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQ. ELGADIPKIA
Template Known Secondary structure  S

SGGG
.......TT
SS



.TT
S
Template Predicted Secondary structure 








.......









.



Template SS confidence 















































































   101........110.........120 .........130.........140.........150.........160.. .......170..
 
   206...210....... ..220.........230.........
Predicted Secondary structure 


...........









Query SS confidence 











. . . . . . . . . . .





















Query Sequence  YVEKGFERIVAG. . . . . . . . . . . CPVPIVIAGGKKLPEREALEMC
Query Conservation     
    

  ...........   



 

    
   
   
Alig confidence 











...........





















Template Conservation         


 

  
          


 
 

  
  


   
Template Sequence  VMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGE
Template Known Secondary structure 

SST
SS


TGGGT
Template Predicted Secondary structure 













Template SS confidence 












































   173......180.........190.........200.........210.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions