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Job DescriptionP76143
Confidence82.55%DateThu Jan 5 12:19:36 GMT 2012
Rank339Aligned Residues113
% Identity16%Templatec3ktsA_
PDB info PDB header:transcriptional regulatorChain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   127..130.........140.........150.........160.........170.........180.........190.........200.....
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Query Sequence  MDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY.
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Template Sequence  MEKILELDLTYMVMLETH. . . . . . . . VAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDF. . . LCTEICPDGIISTR
Template Known Secondary structure  TTSS


S........TTTTT
GGGT


S...TT

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   20.........30....... ..40.........50.........60.........70.... .....80........
 
   206...210.........220.........230.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YVEKGFERIVAGCPVPIVIAGGKKLPEREALEMC
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Template Sequence  GNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETSEQ. . . . . V
Template Known Secondary structure  TT


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   8990.........100.........110.........120.........130.........140.........150.........160.. .
 
   240.........250.....
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Query Sequence  WQAIDQGASGVDMGRN
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Template Sequence  NQVIASGAIAVTTSNK
Template Known Secondary structure  TTT

G
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   164.....170.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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