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Job DescriptionP76143
Confidence30.22%DateThu Jan 5 12:19:36 GMT 2012
Rank474Aligned Residues186
% Identity13%Templatec3chvA_
PDB info PDB header:metal binding proteinChain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution
Resolution1.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  TNRPVVLRASGANSILAELSNEAVALSMDDAVR. . . . . . . LNSCAVAAQVYIG. . . . SEYEHQSIKNIIQLVDAGMKVGM
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Template Sequence  ANKPCIICVAITGSVPTKADNPAVPITVSEQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCP. . GX
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   5....10.........20.........30.........40.........50.........60.........70.........80 ..
 
   169170.........180... ......190.........200.........210......
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Query Sequence  PTMAVTGVGKDMVRD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . QRYFSLATRIAAEMGAQIIKTYYVEKGFERIVA. . .
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Template Sequence  IVQFSTGGRSGAGQARGGXLPLKPDXASLSVGSNNFPSRVYENPPDLVDWLAAQXRSYRVTPEIEAFDLSHILRAIDXHG
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GGGGGTTGGG

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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   217..220...... ...230.........240...... ...250........
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Query Sequence  . . . . . GCPVPIVIAG. . . GKKLPEREALEMCWQAIDQG. . . . ASGVDMGRNIFQ. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  RGLLYGKLYVQFVXGVKNAXPADREVFDFYVRXXRTRAPQAEWCAAGIGANQLTVNEWAIAAGGHTRTGLEDNIRLDRQT
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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   259260.........270...... ...280.......
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Query Sequence  . SDHPVAMMKAVQAVVHHN. . . . ETADRAYELYL
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Template Sequence  LAPSNAALVRRSVELCDKYQRPVASWQQAREILG
Template Known Secondary structure  B


TT

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   243......250.........260.........270......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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