Job Description P76143 Confidence 30.22% Date Thu Jan 5 12:19:36 GMT 2012 Rank 474 Aligned Residues 186 % Identity 13% Template c3chvA_ PDB info PDB header:metal binding protein Chain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution Resolution 1.45 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.								.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.														.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.														.	.	.	.
Query Sequence		T	N	R	P	V	V	L	R	A	S	G	A	N	S	I	L	A	E	L	S	N	E	A	V	A	L	S	M	D	D	A	V	R	.	.	.	.	.	.	.	L	N	S	C	A	V	A	A	Q	V	Y	I	G	.	.	.	.	S	E	Y	E	H	Q	S	I	K	N	I	I	Q	L	V	D	A	G	M	K	V	G	M
Query Conservation																																			.	.	.	.	.	.	.														.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.														.	.	.	.																				.	.
Template Conservation																																																																														.	.
Template Sequence		A	N	K	P	C	I	I	C	V	A	I	T	G	S	V	P	T	K	A	D	N	P	A	V	P	I	T	V	S	E	Q	V	E	S	T	Q	E	A	F	E	A	G	A	A	I	A	H	C	H	V	R	N	D	D	G	T	P	S	S	D	P	D	R	F	A	R	L	T	E	G	L	H	T	H	C	P	.	.	G	X
Template Known Secondary structure						B									S	S			T	T	T		T	T				S															T											T	T	S																				S	T	.	.	T
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.																														.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Query Sequence		P	T	M	A	V	T	G	V	G	K	D	M	V	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	Y	F	S	L	A	T	R	I	A	A	E	M	G	A	Q	I	I	K	T	Y	Y	V	E	K	G	F	E	R	I	V	A	.	.	.
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.
Template Conservation
Template Sequence		I	V	Q	F	S	T	G	G	R	S	G	A	G	Q	A	R	G	G	X	L	P	L	K	P	D	X	A	S	L	S	V	G	S	N	N	F	P	S	R	V	Y	E	N	P	P	D	L	V	D	W	L	A	A	Q	X	R	S	Y	R	V	T	P	E	I	E	A	F	D	L	S	H	I	L	R	A	I	D	X	H	G
Template Known Secondary structure									T	T	T			G	G	G	G	G	T	T	G	G	G			S							S					S	S	S																				T								S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
							217	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.											.	.	.																					.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.											.	.	.																					.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	G	C	P	V	P	I	V	I	A	G	.	.	.	G	K	K	L	P	E	R	E	A	L	E	M	C	W	Q	A	I	D	Q	G	.	.	.	.	A	S	G	V	D	M	G	R	N	I	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.											.	.	.																					.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.											.	.	.																					.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	L	L	Y	G	K	L	Y	V	Q	F	V	X	G	V	K	N	A	X	P	A	D	R	E	V	F	D	F	Y	V	R	X	X	R	T	R	A	P	Q	A	E	W	C	A	A	G	I	G	A	N	Q	L	T	V	N	E	W	A	I	A	A	G	G	H	T	R	T	G	L	E	D	N	I	R	L	D	R	Q	T
Template Known Secondary structure		T	T		S		S	S										T	T	S																				T	T	S								T	T												T	T						S	T	T	T			B	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
			259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.					.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure		.																			.	.	.	.
Query SS confidence		.																			.	.	.	.
Query Sequence		.	S	D	H	P	V	A	M	M	K	A	V	Q	A	V	V	H	H	N	.	.	.	.	E	T	A	D	R	A	Y	E	L	Y	L
Query Conservation		.																			.	.	.	.
Alig confidence		.																			.	.	.	.
Template Conservation
Template Sequence		L	A	P	S	N	A	A	L	V	R	R	S	V	E	L	C	D	K	Y	Q	R	P	V	A	S	W	Q	Q	A	R	E	I	L	G
Template Known Secondary structure		B																		T	T			B										T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions