Job Description P76143 Confidence 97.64% Date Thu Jan 5 12:19:36 GMT 2012 Rank 138 Aligned Residues 147 % Identity 18% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.											.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.
Query Sequence		N	R	P	V	V	L	R	A	S	G	A	N	S	I	L	A	E	L	S	N	E	A	V	A	L	S	M	D	D	A	V	R	L	N	S	C	A	V	A	A	Q	V	Y	I	.	.	.	.	.	.	.	.	.	.	G	S	E	Y	E	H	Q	S	I	K	N	I	I	Q	L	V	D	A	G	M	K	V	G	M	P	T
Query Conservation																																														.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.
Template Sequence		E	H	P	I	A	L	Q	L	A	G	S	D	P	.	.	.	.	.	.	.	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V
Template Known Secondary structure		G		S								S			.	.	.	.	.	.	.													T	T		S										S							T		G	G	G	G	G	G														T	T		S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.								70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																			.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query Sequence		M	A	V	T	G	V	G	K	D	M	V	R	D	Q	R	Y	F	S	L	A	T	R	I	A	A	E	M	G	A	Q	I	I	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	V	E	K	G	F	E	R	I	V	A	G	C	.	P	V	P	I	V	I	A	G	G	K	K	L	P
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.											.
Template Conservation																																																																															.
Template Sequence		T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	.	R	S
Template Known Secondary structure							S		B	T	T																	T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S		.		S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	E	A	L	E	M	C	W	Q	A	I	D	Q	G	A	S	G	V	D	M	G	R	N	I	F	Q	S	D
Query Conservation
Alig confidence										.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		L	E	E	A	L	F	H	L	.	.	.	.	.	K	R	V	D	G	V	X	L	G	R	A	V	Y	E	D	P
Template Known Secondary structure										.	.	.	.	.	T	T	S	S					S							G
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions