Job Description P76143 Confidence 98.09% Date Thu Jan 5 12:19:36 GMT 2012 Rank 105 Aligned Residues 186 % Identity 13% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.																															.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	G	L	E	R	I	D	I	N	I	A	P	L	F	E	.	H	A	D	V	L	M	C	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	I	L	R	S	V	V	P	P	A	T	N	R	P	V	V	L	R	A	S	G	A	N	S	I
Query Conservation																	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.
Template Sequence		P	D	Y	E	T	S	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	G	F	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	N	G	I	R	F	E	D	V	L	E	L	S	E	T	L	R	K	E	F	P	D	I	P	F	L	L	M	.	.	.	.	.	T	Y
Template Known Secondary structure		S															T	T		S									S			T	T	S														T	T																		T	T	S						.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100						.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	L	S	N	E	A	V	A	L	S	M	D	D	A	V	R	L	N	S	C	A	V	A	A	Q	V	Y	I	G	S	E	Y	E	H	Q	S	I	K	N	I	I	Q	L	V	D	A	G	M	K	V	G	M	P	T	M	A	V	T	G	V	G	K	D	M	V	R	D	Q	R	Y	F	S	L	A	T	R	I	A
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Sequence		Y	N	P	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	I	V	P	D	L	P	.	.	.	.	.	.	.	.	P	E	E	A	E	E	L	K	A	V	M	K	K	Y	V	L	S	F	V	P	L	G	A	P	T	S	T	.	.	.	.	.	.	.	R	K	R	I	K	L	I	C
Template Known Secondary structure																				T	T							T	T			.	.	.	.	.	.	.	.														T	T									T	T			.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.									.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.								160	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.						.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																																																				.	.
Query SS confidence																.	.	.	.	.																																																				.	.
Query Sequence		A	E	M	G	A	Q	I	I	K	T	Y	Y	V	E	.	.	.	.	.	K	G	F	E	R	I	V	A	G	C	P	V	P	I	V	I	A	G	G	K	K	L	P	E	R	E	A	L	E	M	C	W	Q	A	I	D	Q	G	A	S	G	V	D	M	G	R	N	I	F	Q	S	.	.	D	H	P	V	A	M	M	K
Query Conservation																.	.	.	.	.																																																				.	.
Alig confidence																.	.	.	.	.																									.	.	.	.	.	.																						.	.
Template Conservation																																													.	.	.	.	.	.
Template Sequence		E	A	A	D	E	M	T	Y	F	V	S	V	T	G	Y	E	R	I	K	K	K	V	E	E	Y	R	E	L	C	D	K	P	V	V	V	G	F	G	V	S	K	K	E	.	.	.	.	.	.	H	A	R	E	I	G	S	F	A	D	G	V	V	V	G	S	A	L	V	K	L	A	G	Q	K	K	I	E	D	L	G
Template Known Secondary structure					S	S						S	S																			S						S	S			S			.	.	.	.	.	.							T	T	S	S														T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		268	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	Q	A	V	V	H	H	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	V	K	E	L	K	E	G	L
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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