Job Description P76143 Confidence 91.41% Date Thu Jan 5 12:19:36 GMT 2012 Rank 306 Aligned Residues 190 % Identity 15% Template c1ydoC_ PDB info PDB header:lyase Chain: C: PDB Molecule:hmg-coa lyase; PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181. Resolution 2.71 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		D	H	G	Y	F	Q	G	P	T	T	G	L	E	R	I	D	I	N	I	A	P	L	F	E	.	H	A	D	V	L	M	C	T	R	G	I	L	R	S	V	V	P	P	A	T	N	R	P	V	V	L	R	A	S	G	A	N	S	I	L	A	E	L	S	N	E	A	V	A	L	S	M	D	D	A	V	R	L	N	S
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		D	G	L	Q	N	E	P	V	W	I	A	T	E	D	K	I	T	W	I	N	Q	L	S	R	T	G	L	S	Y	I	E	I	T	S	F	V	H	P	K	W	I	P	A	L	R	D	A	I	D	V	A	K	G	I	D	R	E	K	G	V	T	Y	A	A	L	V	P	N	Q	R	G	L	E	N	A	L	E	G	G	I
Template Known Secondary structure			T	G	G	G	S	S	S																T	T	T		S								S		T	T	T		G	G	G	T	T								S				T	T									S											T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.										.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.																											.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.																											.	.	.	.
Query Sequence		C	A	V	A	A	Q	V	Y	I	G	S	E	Y	.	.	.	.	.	.	.	.	.	E	H	Q	S	I	K	N	I	I	Q	L	V	D	A	G	M	K	V	G	M	P	T	M	A	V	T	.	.	.	.	G	V	G	K	D	M	V	R	D	Q	R	Y	F	S	L	A	T	R	I	A	A	E	M	G	A	Q	I	I
Query Conservation															.	.	.	.	.	.	.	.	.																											.	.	.	.
Alig confidence											.				.	.	.	.	.	.	.	.	.																											.	.	.	.
Template Conservation											.
Template Sequence		N	E	A	C	V	F	X	S	A	.	S	E	T	H	N	R	K	N	I	N	K	S	T	S	E	S	L	H	I	L	K	Q	V	N	N	D	A	Q	K	A	N	L	T	T	R	A	Y	L	S	T	V	F	G	C	P	Y	E	K	D	V	P	I	E	Q	V	I	R	L	S	E	A	L	F	E	F	G	I	S	E	L
Template Known Secondary structure		S								S	.	S						T	T	T		S																			T	T										T	T		B	T	T	T	B																		T		S
Template Predicted Secondary structure											.
Template SS confidence
		96	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		203	.	.	.	.	.										.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure								.	.	.	.	.	.	.	.	.												.														.
Query SS confidence								.	.	.	.	.	.	.	.	.												.														.
Query Sequence		K	T	Y	Y	V	E	.	.	.	.	.	.	.	.	.	K	G	F	E	R	I	V	A	G	C	P	.	V	P	I	V	I	A	G	G	K	K	L	P	E	.	R	E	A	L	E	M	C	W	Q	A	I	D	Q	G	A	S	G	V
Query Conservation								.	.	.	.	.	.	.	.	.												.														.
Alig confidence								.	.	.	.	.	.	.	.	.												.								.	.	.				.
Template Conservation																																				.	.	.
Template Sequence		S	L	G	D	T	I	G	A	A	N	P	A	Q	V	E	T	V	L	E	A	L	L	A	R	F	P	A	N	Q	I	A	L	H	F	.	.	.	H	D	T	R	G	T	A	L	A	N	X	V	T	A	L	Q	X	G	I	T	V	F
Template Known Secondary structure						S	S																	T	T	S		G	G	G						.	.	.	B	G	G	G	S													T
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions