Job Description P27303 Confidence 99.95% Date Thu Jan 5 11:43:50 GMT 2012 Rank 1 Aligned Residues 257 % Identity 22% Template c3fppB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca Resolution 2.99 Å

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		48	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		H	F	E	E	T	D	D	A	Y	V	A	G	.	N	Q	I	Q	I	M	S	Q	V	S	G	S	V	T	K	V	W	A	D	N	T	D	F	V	K	E	G	D	V	L	V	T	L	D	P	T	D	A	R	Q	A	F	E	K	A	K	T	A	L	A	S	S	V	R	Q	T	H	Q	L	M	I	N	S	K	Q	L	Q
Query Conservation														.
Alig confidence														.																																																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	Q	S	V	L	A	T	G	K	L	D	A	L	R	K	V	D	V	G	A	Q	V	S	G	Q	L	K	T	L	S	V	A	I	G	D	K	V	K	K	D	Q	L	L	G	V	I	D	P	E	Q	A	E	N	Q	I	K	E	V	E	A	T	L	M	E	L	R	A	Q	R	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																						S	S											T	T		B			T	T																														.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	I	E	V	Q	K	I	A	L	A	K	A	Q	S	D	Y	N	R	R	V	P	L	G	N	A	N	L	I	G	R	E	E	L	Q	H	A	R	D	A	V	T	S	A	Q	A	Q	L	D	V	A	I	Q	Q	Y	N	A	N	Q	A	M	I	L	G	T	K	L	E	D	Q	P	A	V	Q	Q	A	A	T	E	V
Query Conservation
Alig confidence		.	.	.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	Q	Q	A	E	A	E	L	K	L	A	R	V	T	Y	S	R	Q	Q	R	L	A	Q	T	Q	A	V	S	Q	Q	D	L	D	N	A	A	T	E	M	A	V	K	Q	A	Q	I	G	T	I	D	A	Q	I	K	R	N	Q	A	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.																							S			S	T	T								T																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		R	N	A	W	L	A	L	E	R	T	R	I	I	S	P	M	T	G	Y	V	S	R	R	A	V	Q	P	G	A	Q	I	S	P	T	T	.	.	.	P	L	M	A	V	V	P	A	T	N	M	W	V	D	A	N	F	K	E	T	Q	I	A	N	M	R	I	G	Q	P	V	T	I	T	T	D	I	Y	G	D	D	V
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.
Template Conservation
Template Sequence		D	T	A	K	T	N	L	D	Y	T	R	I	V	A	P	M	A	G	E	V	T	Q	I	T	T	L	Q	G	Q	T	V	I	A	A	Q	Q	A	P	N	I	L	T	L	A	D	M	S	A	M	L	V	K	A	Q	V	S	E	A	D	V	I	H	L	K	P	G	Q	K	A	W	F	T	V	L	G	D	Q	L	T	R
Template Known Secondary structure										T	T					S	S		S	B						S		S	S						S	S	S																					T	T	T	T	T	S			S	S								T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	T	G	K	V	V	G	L	D	M	G	T	G	S	A	F	S	L	L	P	A	Q	N	A	T	G	N	W	I	K	V	V	Q	R	L	P	V	R	I	E	L	D	Q	K	Q	L	E	Q	Y	P	L	R	I	G	L	S	T	L	V	S	V	N	T	T	N	R	D	G	Q	V
Query Conservation
Alig confidence		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Sequence		.	Y	E	G	Q	I	K	D	V	L	P	T	P	E	K	V	N	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	Y	Y	A	R	F	E	V	P	N	P	N	G	L	.	.	.	L	R	L	D	M	T	A	Q	V	H	I	Q	L	T	D	V	K	N	V	L
Template Known Secondary structure		.								B		S	S				S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S	S		.	.	.			T	T
Template Predicted Secondary structure		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template SS confidence
			255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.															.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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