Job Description P27303 Confidence 99.91% Date Thu Jan 5 11:43:50 GMT 2012 Rank 3 Aligned Residues 221 % Identity 21% Template c2f1mA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra Resolution 2.71 Å

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		54	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		D	A	Y	V	A	G	.	N	Q	I	Q	I	M	S	Q	V	S	G	S	V	T	K	V	W	A	D	N	T	D	F	V	K	E	G	D	V	L	V	T	L	D	P	T	D	A	R	Q	A	F	E	K	A	K	T	A	L	A	S	S	V	R	Q	T	H	Q	L	M	I	N	S	K	Q	L	Q	A	N	I	E	V	Q
Query Conservation								.
Alig confidence								.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	R	T	S	A	Y	R	I	A	E	V	R	P	Q	V	S	G	I	I	L	K	R	N	F	K	E	G	S	D	I	E	A	G	V	S	L	Y	Q	I	D	P	A	T	Y	Q	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	S	A	K	G	D	L	A	K	A
Template Known Secondary structure								S								S	S									S		T	T					T	T	S		S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																						.	.	.	.	.	110	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	A	L	A	K	A	Q	S	D	Y	N	R	R	V	P	L	G	N	A	N	L	I	G	R	E	E	L	Q	H	A	R	D	A	V	T	S	A	Q	A	Q	L	D	V	A	I	Q	Q	Y	N	A	N	Q	A	M	I	L	G	T	K	L	E	D	Q	P	A	V	Q	Q	A	A	T	E	V	R	N	A	W	L	A
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	A	A	N	I	A	Q	L	T	V	N	R	Y	Q	K	L	L	G	T	Q	Y	I	S	K	Q	E	Y	D	Q	A	L	A	D	A	Q	Q	A	N	A	A	V	T	A	A	K	A	A	V	E	T	A	R	I	N	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T	T	T	S	T	T																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		L	E	R	T	R	I	I	S	P	M	T	G	Y	V	S	R	R	A	V	Q	P	G	A	Q	I	S	P	T	T	P	.	.	L	M	A	V	V	P	A	T	N	M	W	V	D	A	N	F	K	E	T	Q	I	A	N	M	R	I	G	Q	P	V	T	I	T	T	D	I	Y	G	D	D	V	K	Y	T	G	K	V	V
Query Conservation																																.	.
Alig confidence		.	.																													.	.																					.	.	.	.	.																	.
Template Conservation		.	.																																																			.	.	.	.	.																	.
Template Sequence		.	.	Y	T	K	V	T	S	P	I	S	G	R	I	G	K	S	N	V	T	E	G	A	L	V	Q	N	G	Q	A	T	A	L	A	T	V	Q	Q	L	D	P	I	Y	V	D	V	T	Q	S	S	N	D	.	.	.	.	.	X	K	A	K	V	S	L	I	T	S	D	G	I	K	F	P	.	Q	D	G	T	L	E
Template Known Secondary structure		.	.	T	T					S	S								S	S		T	T					T	T		S	S		S							S	S									T	T	T	.	.	.	.	.										S	S	S		B		S	.	S		B			S
Template Predicted Secondary structure		.	.																																																			.	.	.	.	.																	.
Template SS confidence
				173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	D	M	G	T	G	S	A	F	S	L	L	P	A	Q	N	A	T	G	N	W	I	K	V	V	Q	R	L	P	V	R	I	E	L	D	Q	K	Q	L	E	Q	Y	P	L	R	I	G	L	S	T	L	V	S	V
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		F	S	D	V	T	V	D	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	S	I	T	L	R	A	I	F	P	N	P	D	H	T	.	.	.	X	X	P	G	X	F	V	R	A	R	L
Template Known Secondary structure		S	S						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S												T	T			.	.	.			S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270																	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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