Job Description P06966 Confidence 96.00% Date Thu Jan 5 10:59:34 GMT 2012 Rank 79 Aligned Residues 123 % Identity 18% Template c3l1pA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:pou domain, class 5, transcription factor 1; PDBTitle: pou protein:dna complex Resolution 2.80 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.							.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																										.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.
Query Sequence		I	G	E	R	I	R	Y	R	R	K	N	L	K	H	T	Q	R	S	L	A	K	A	L	K	.	.	.	.	.	.	I	S	H	V	S	V	S	Q	W	E	R	G	D	S	E	P	T	G	K	N	L	F	A	L	S	K	V	L	Q	C	S	P	T	W	I	L	F	G	D	E	D	K	Q	P	T	P	P	V	E	K
Query Conservation																										.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.														.	.															.	.	.
Template Conservation																																													.	.															.	.	.
Template Sequence		F	A	K	L	L	K	Q	K	R	I	T	L	G	Y	T	Q	A	D	V	G	L	T	L	G	V	L	F	G	K	V	F	S	Q	T	T	I	S	R	F	E	A	L	Q	.	.	L	S	L	K	N	M	S	K	L	R	P	L	L	E	.	.	.	K	W	V	E	E	A	D	N	N	E	N	L	Q	E	I	S	K	S
Template Known Secondary structure													T	T															S													T	T		.	.	S														.	.	.							T	T							S	S
Template Predicted Secondary structure																																													.	.															.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		82	.	.								.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.
Query Sequence		P	V	A	.	.	.	.	.	.	.	L	S	P	K	E	L	E	L	L	E	L	F	N	A	L	P	E	S	E	Q	D	T	Q	L	A	E	M	R	A	R	V	K	N	F	N	K	L	F	E	E	L	L	K	A	R	Q	R	T	N	K	R
Query Conservation					.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Q	A	R	K	R	K	R	T	S	I	E	N	R	V	R	W	S	L	E	T	M	F	L	K	S	P	K	P	S	L	Q	Q	I	T	H	I	A	N	Q	L	G	L	E	K	D	V	V	R	V	W	F	S	N	R	R	Q	K	G	K	R
Template Known Secondary structure					S																	T	T	T	T	T		S														T	T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions