Job Description P06966 Confidence 94.37% Date Thu Jan 5 10:59:34 GMT 2012 Rank 89 Aligned Residues 128 % Identity 16% Template c3d1nK_ PDB info PDB header:transcription regulator/dna Chain: K: PDB Molecule:pou domain, class 6, transcription factor 1; PDBTitle: structure of human brn-5 transcription factor in complex2 with corticotrophin-releasing hormone gene promoter Resolution 2.51 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.							.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.									.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query Sequence		I	G	E	R	I	R	Y	R	R	K	N	L	K	H	T	Q	R	S	L	A	K	A	L	K	.	.	.	.	.	.	I	S	H	V	S	V	S	Q	W	E	R	G	D	S	E	P	T	G	K	N	.	.	.	.	.	.	.	.	L	F	A	L	S	K	V	L	Q	C	S	P	T	W	I	L	F	G	D	E	D	K
Query Conservation																										.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	K	N	F	K	I	R	R	L	S	L	G	L	T	Q	T	Q	V	G	Q	A	X	T	A	T	E	G	P	A	Y	S	Q	S	A	I	S	R	F	E	K	L	D	I	T	P	K	S	A	Q	K	L	K	P	V	L	E	K	W	L	N	E	A	E	L	R	N	Q	E	G	Q	Q	N	L	X	E	F	V	G	G
Template Known Secondary structure												T	T	T													S	S	S														T		S																						T	T	S	S	S										S
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	T	P	P	V	E	K	P	V	A	L	S	P	K	E	L	E	L	L	E	L	F	N	A	L	P	E	S	E	Q	D	T	Q	L	A	E	M	R	A	R	V	K	N	F	N	K	L	F	E	E	L	L	K	A	R	Q	R	T	N	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	S	K	K	R	K	R	R	T	S	F	T	P	Q	A	I	E	A	L	N	A	Y	F	E	K	N	P	L	P	T	G	Q	E	I	T	E	X	A	K	E	L	N	Y	D	R	E	V	V	R	V	W	F	S	N	R	R	Q	T	L	K	N
Template Known Secondary structure		S																											S	S													T	T	S														T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions