Job Description P06966 Confidence 93.40% Date Thu Jan 5 10:59:34 GMT 2012 Rank 95 Aligned Residues 115 % Identity 18% Template c1hf0A_ PDB info PDB header:transcription factor Chain: A: PDB Molecule:octamer-binding transcription factor 1; PDBTitle: crystal structure of the dna-binding domain of oct-1 bound2 to dna as a dimer Resolution 2.7 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.							.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																										.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.
Query Sequence		I	G	E	R	I	R	Y	R	R	K	N	L	K	H	T	Q	R	S	L	A	K	A	L	K	.	.	.	.	.	.	I	S	H	V	S	V	S	Q	W	E	R	G	D	S	E	P	T	G	K	N	L	F	A	L	S	K	V	L	Q	C	S	P	T	W	I	L	F	G	D	E	D	K	Q	P	T	P	P	V	E	K
Query Conservation																										.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.														.	.															.	.	.					.	.	.	.	.	.	.	.
Template Conservation																																													.	.															.	.	.					.	.	.	.	.	.	.	.
Template Sequence		F	A	K	T	F	K	Q	R	R	I	K	L	G	F	T	Q	G	D	V	G	L	A	M	G	K	L	Y	G	N	D	F	S	Q	T	T	I	S	R	F	E	A	L	N	.	.	L	S	F	K	N	M	S	K	L	K	P	L	L	E	.	.	.	K	W	L	N	.	.	.	.	.	.	.	.	D	A	E	R	K	K
Template Known Secondary structure													T	T														S	S													T	T		.	.	S														.	.	.					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.															.	.	.					.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.									.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	A	L	S	P	K	E	L	E	L	L	E	L	F	N	A	L	P	E	S	E	Q	D	T	Q	L	A	E	M	R	A	R	V	K	N	F	N	K	L	F	E	E	L	L	K	A	R	Q	R	T	N	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	T	S	I	E	T	N	I	R	V	A	L	E	K	S	F	L	E	N	Q	K	P	T	S	E	E	I	T	M	I	A	D	Q	L	N	M	E	K	E	V	I	R	V	W	F	S	N	R	R	Q	K	E	K	R
Template Known Secondary structure																					S	S														T																		T
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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