Job Description P42620 Confidence 99.94% Date Thu Jan 5 12:01:53 GMT 2012 Rank 39 Aligned Residues 191 % Identity 18% Template c3lypA_ PDB info PDB header:transcription Chain: A: PDB Molecule:stringent starvation protein a; PDBTitle: structure of stringent starvation protein a homolog from pseudomonas2 fluorescens Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		R	Y	H	L	Y	V	S	L	A	C	P	W	A	H	R	T	L	I	M	R	K	L	K	G	L	E	.	P	F	I	S	V	S	V	V	N	P	L	M	L	E	N	G	W	T	F	D	D	S	F	P	G	A	T	G	D	T	L	Y	Q	N	E	F	L	Y	Q	L	Y	L	H	A	D	P	H	Y	S	G	R	V	T
Query Conservation																												.
Alig confidence																												.						.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	A	C	Y	S	D	P	A	D	H	Y	S	H	R	V	R	I	V	L	A	E	K	G	V	S	A	E	I	I	S	V	.	.	.	.	.	.	.	E	Q	P	P	K	L	I	E	V	N	P	Y	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T															T									.	.	.	.	.	.	.											T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.								40	.	.	.	.	.	.	.	.	.	50	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	V	L	W	D	K	K	N	H	T	I	V	S	N	E	S	A	E	I	I	R	M	F	N	T	A	F	D	A	L	G	A	K	A	G	D	Y	Y	P	P	A	L	Q	T	K	I	D	E	L	N	G	W	I	Y	D	T	V	N	N	G	V	Y	K	A	G	F	A	T	S	Q	E	A	Y	D	E	A	V	A	K
Query Conservation
Alig confidence								.	.	.						.																						.	.
Template Conservation								.	.	.						.																						.	.
Template Sequence		L	P	T	L	V	D	.	.	.	R	L	A	L	W	.	E	S	T	V	V	X	E	Y	L	D	E	R	Y	P	H	P	P	L	L	P	V	.	.	Y	P	V	A	R	A	N	S	R	L	L	I	H	R	I	Q	R	D	W	C	G	Q	V	D	L	I	L	D	P	R	T	K	E	A	A	R	V	Q	A	R	K	E
Template Known Secondary structure		S	S					.	.	.						.	S												S		S	S			S		S	.	.	S																		T										T	T	S
Template Predicted Secondary structure								.	.	.						.																						.	.
Template SS confidence
		57	.	.	60	.	.				.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	E	S	L	A	R	L	E	Q	I	L	G	Q	H	R	Y	L	T	G	N	Q	L	T	E	A	D	I	R	L	W	T	T	L	V	R	F	D	P	V	Y	V	T	H	F	K	C	D	K	H	R	I	S	D	Y	L	N	L	Y	G	F	L	R	D	I	Y	Q	M	P	G	I	A	E	T	V	N	F	D	H
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.
Template Sequence		L	R	E	S	L	T	G	V	S	P	L	F	A	D	K	P	F	F	L	S	E	E	Q	S	L	V	D	C	C	L	L	P	I	L	W	R	L	P	V	L	G	I	E	.	.	.	.	.	.	.	L	P	R	Q	A	K	P	L	L	D	Y	X	E	R	Q	F	A	R	E	A	F	Q	A	S	L	S	G	V	E
Template Known Secondary structure										G	G	G	G	G	T	S	S	B	T	T	B	S	S														T	T	T	T	T	T			.	.	.	.	.	.	.			G	G	G													S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.								.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions