 |
Job Description | P42620 | Confidence | 91.55% | Date | Thu Jan 5 12:01:53 GMT 2012 |
Rank | 219 | Aligned Residues | 64 |
% Identity | 22% | Template | c2jadA_ |
PDB info |
PDB header:electron transport | Chain: A: PDB Molecule:yellow fluorescent protein glutaredoxin fusion |
PDBTitle: yellow fluorescent protein - glutaredoxin fusion protein
|
Resolution | 2.7 Å |
|
 |
  |   |
52 | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | D | R | Y | H | L | Y | V | S | L | A | C | P | W | A | H | R | T | L | I | M | R | K | L | K | G | L | E | P | F | I | S | V | S | V | V | N | P | L | M | L | E | N | G | W | T | F | D | D | S | F | P | G | A | T | G | D | T | L | Y | Q | N | E | F | L | Y | Q | L | Y | L | H | A | D | P | H | Y | S | G | R | V |
Query Conservation |   |
  |
|
|
|   |
|
|   |   |   |   |
|
|   |
|
|
|   |   |
|   |
|   |
|
|
|
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |   |
|   |
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
Template Conservation |   |
  |
|   |
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |
|
|   |
|
|
|   |   |
|   |   |
| . | . | . | . |
|
|   |
|
Template Sequence |   |
E | N | E | I | F | V | A | S | K | T | Y | C | P | Y | S | H | A | A | L | N | T | L | F | E | K | L | K | V | P | R | S | K | V | L | V | L | Q | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | D | M | K | E | G | A | D | I | Q | A | A | L | Y | E | I | . |
. |
. |
. |
N | G | Q | R |
Template Known Secondary structure |   |
T |
| S |  |  |  |  |  |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|
| T | T | T |  |  |  |  |  | G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | G | S | T | T |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |
|
|
|
Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
262 | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | |
|
|
|
. | . | . | . |
  |
  |   |
132 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
Query Sequence |   |
T | V | P | V | L | W |
Query Conservation |   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|
Template Sequence |   |
T | V | P | N | I | Y |
Template Known Secondary structure |   |
S | S |
|  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
  |   |
320 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|