Job Description P42620 Confidence 99.95% Date Thu Jan 5 12:01:53 GMT 2012 Rank 26 Aligned Residues 193 % Identity 17% Template c1yy7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:stringent starvation protein a; PDBTitle: crystal structure of stringent starvation protein a (sspa),2 an rna polymerase-associated transcription factor Resolution 2.02 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		E	K	D	R	Y	H	L	Y	V	S	L	A	C	P	W	A	H	R	T	L	I	M	R	K	L	K	G	L	E	.	P	F	I	S	V	S	V	V	N	P	L	M	L	E	N	G	W	T	F	D	D	S	F	P	G	A	T	G	D	T	L	Y	Q	N	E	F	L	Y	Q	L	Y	L	H	A	D	P	H	Y	S	G
Query Conservation																															.
Alig confidence																															.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Sequence		K	R	S	V	M	T	L	F	S	G	P	T	D	I	F	S	H	Q	V	R	I	V	L	A	E	K	G	V	S	V	E	I	E	Q	V	E	A	D	N	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	L	I	D	L	N	P	.	.	.	.
Template Known Secondary structure		G	S	S	S							T	T															T										T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																												.	.	50	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	T	V	P	V	L	W	D	K	K	N	H	T	I	V	S	N	E	S	A	E	I	I	R	M	F	N	T	A	F	D	A	L	G	A	K	A	G	D	Y	Y	P	P	A	L	Q	T	K	I	D	E	L	N	G	W	I	Y	D	T	V	N	N	G	V	Y	K	A	G	F	A	T	S	Q	E	A	Y	D	E	A
Query Conservation
Alig confidence											.	.	.																														.	.	.																					.
Template Conservation											.	.	.																														.	.	.																					.
Template Sequence		Y	R	T	V	P	T	L	V	D	.	.	.	R	E	L	T	L	Y	E	S	R	I	I	M	E	Y	L	D	E	R	F	P	H	P	P	L	M	P	V	Y	P	.	.	.	V	A	R	G	S	S	R	L	M	M	H	R	I	E	H	D	W	Y	S	L	.	L	Y	K	I	E	Q	G	N	A	Q	E	A	E	A	A
Template Known Secondary structure		T			S	S					.	.	.	T	T					S														S	S			S		S	S		.	.	.																	T				.							S
Template Predicted Secondary structure											.	.	.																														.	.	.																					.
Template SS confidence
		56	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	K	V	F	E	S	L	A	R	L	E	Q	I	L	G	Q	H	R	Y	L	T	G	N	Q	L	T	E	A	D	I	R	L	W	T	T	L	V	R	F	D	P	V	Y	V	T	H	F	K	C	D	K	H	R	I	S	D	Y	L	N	L	Y	G	F	L	R	D	I	Y	Q	M	P	G	I	A	E	T	V
Query Conservation
Alig confidence																																																	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.
Template Sequence		R	K	Q	L	R	E	E	L	L	S	I	A	P	V	F	N	E	T	P	F	F	M	S	E	E	F	S	L	V	D	C	Y	L	A	P	L	L	W	R	L	P	V	L	G	I	E	F	.	.	.	.	.	.	T	G	A	G	S	K	E	L	K	G	Y	M	T	R	V	F	E	R	D	A	F	L	A	S	L
Template Known Secondary structure												T	T	T						S	B	T	T	B	S	S														T	G	G	G	G	T				.	.	.	.	.	.		S	T	T													T	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.							.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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