 |
Job Description | P37767 | Confidence | 79.52% | Date | Thu Jan 5 11:57:35 GMT 2012 |
Rank | 348 | Aligned Residues | 90 |
% Identity | 12% | Template | c3luaA_ |
PDB info |
PDB header:transcription regulator | Chain: A: PDB Molecule:response regulator receiver protein; |
PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum
|
Resolution | 2.40 Å |
|
 |
  |   |
133 | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | |
. | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | |
|
|
|
. | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
Query Sequence |   |
R | R | I | I | L | T | G | I | G | A | S | G | L | V | A | Q | N | F | A | W | K | L | M | K | I | G | . |
F | N | A | A | A | V | R | D | M | H | A | L | L | A | T | V | Q | A | S | S | P | D | D | L | L | L | A | I | S | Y | T | G | V | R | R | E | L | N | L | A | A | D | E | M | L | R | V | . |
. |
. |
. |
G | G |
Query Conservation |   |
  |   |
|   |
|   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
| . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   | . | . | . | . |
|   |
Alig confidence |   |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
Template Conservation |   |
  |
|
|
|
|
| . | . |
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|
Template Sequence |   |
G | T | V | L | L | I | . |
. |
D | Y | F | E | Y | E | R | E | K | T | K | I | I | F | D | N | I | G | E | Y | D | F | I | E | V | E | N | L | K | K | F | Y | S | I | F | K | D | L | D | S | I | T | L | I | I | X | D | I | A | F | P | V | E | K | E | G | L | E | V | L | S | A | I | R | N | N | S | R | T | A | N | T |
Template Known Secondary structure |   |
|  |  |  |  |  | . | . |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
| S |  |  |  |  |  | T | T | T | T | T |
|
|
|
| S |  |  |  |  |
| S |
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | S | G | G | G | T | T |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  | . | . |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | |
|
. | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
208 | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | V | L | A | I | T | G | F | T | P | N | A | L | Q | Q | R | A |
Query Conservation |   |
  |
|
|   |
|
|   |   |   |   |
|   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
P | V | I | I | A | T | K | S | D | N | P | G | Y | R | H | A | A |
Template Known Secondary structure |   |
|  |  |  |  |  | S |
|
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|