Job Description P37767 Confidence 94.51% Date Thu Jan 5 11:57:35 GMT 2012 Rank 137 Aligned Residues 136 % Identity 13% Template c3bbnB_ PDB info PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Resolution 9.40 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.																										.	.	.	.													.	.	.	.
Query SS confidence																																				.																										.	.	.	.													.	.	.	.
Query Sequence		A	M	Y	A	T	L	N	V	N	S	E	E	K	L	H	E	C	V	T	M	L	R	S	A	R	R	I	I	L	T	G	I	G	A	.	S	G	L	V	A	Q	N	F	A	W	K	L	M	K	I	G	F	N	A	A	A	V	R	D	M	.	.	.	.	H	A	L	L	A	T	V	Q	A	S	S	P	.	.	.	.
Query Conservation																																				.																										.	.	.	.													.	.	.	.
Alig confidence												.																								.																										.	.	.	.													.	.	.	.
Template Conservation												.
Template Sequence		N	L	T	R	T	A	R	F	L	S	.	E	A	C	D	L	V	F	D	A	S	S	R	G	K	Q	F	L	I	V	G	T	K	N	K	A	A	D	S	V	A	R	A	A	I	R	A	R	C	H	Y	V	N	K	K	W	L	G	G	M	L	T	N	W	S	T	T	E	T	R	L	H	K	F	R	D	L	R	M	E
Template Known Secondary structure										T		.						S					T	T	T										T	T	T												T						S	S			S		S	S	S																		S
Template Predicted Secondary structure												.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
																																							180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	L	L	L	A	I	S	Y	T	G	V	R	R	E	L	N	L	A	A	D	E	M	L	R	V	G	G	K	V	L	A	I	T	G	F	T	P	N	A	L	Q	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.																									.	.
Template Conservation																																																			.	.	.	.																									.	.
Template Sequence		Q	T	A	G	R	L	A	R	L	P	K	R	D	A	A	V	V	K	R	Q	L	S	H	L	Q	T	Y	L	G	G	I	K	Y	M	T	G	L	P	D	I	V	I	I	V	D	Q	Q	E	E	.	.	.	.	Y	T	A	L	R	E	C	I	T	L	G	I	P	T	I	C	L	I	D	T	N	C	N	P	.	.	D
Template Known Secondary structure		T	T	S	T	T	T	T	T	S																T	T	S	T	T	S	T	T	S			S			S					S		T	T	T	T	.	.	.	.									T	T	T									S	S	S			.	.	S
Template Predicted Secondary structure																																																			.	.	.	.																									.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	S	H	C	L	Y	T	I	A	E	E	Q	A	T	N	S	A	S	I	S	A	C	H	A	Q	G	M	L	T	D	L	L	F	I	A	L	I	Q
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	D	I	S	I	P	A	N	D	D	.	.	.	.	.	.	.	.	.	.	A	I	A	S	I	R	L	I	L	T	K	L	V	F	A	I	C	E
Template Known Secondary structure		S		S							S	S	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.											210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions